miRNA display CGI


Results 1 - 20 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19815 3' -60.5 NC_004687.1 + 120368 0.66 0.722491
Target:  5'- aAGUUCaccGAGC-GGUCCGgcuUCAGUCUCa -3'
miRNA:   3'- -UCAAGgc-CUCGuCCGGGC---AGUCGGAG- -5'
19815 3' -60.5 NC_004687.1 + 89605 0.66 0.703015
Target:  5'- aAGUUCuCGuuGAGCcaGGGCCCGcCGGUCgUCg -3'
miRNA:   3'- -UCAAG-GC--CUCG--UCCGGGCaGUCGG-AG- -5'
19815 3' -60.5 NC_004687.1 + 69457 0.66 0.702034
Target:  5'- ---gCCGGGGUAguuguccGGgCUGUCGGCCUUg -3'
miRNA:   3'- ucaaGGCCUCGU-------CCgGGCAGUCGGAG- -5'
19815 3' -60.5 NC_004687.1 + 116161 0.66 0.693187
Target:  5'- cGGUUCCGGcuGGCGGGCuuGagguuGCCa- -3'
miRNA:   3'- -UCAAGGCC--UCGUCCGggCagu--CGGag -5'
19815 3' -60.5 NC_004687.1 + 94393 0.66 0.693187
Target:  5'- gAGUccgCCGGAGCucuGCCCGcccCAGCCc- -3'
miRNA:   3'- -UCAa--GGCCUCGuc-CGGGCa--GUCGGag -5'
19815 3' -60.5 NC_004687.1 + 149356 0.66 0.68331
Target:  5'- --cUCgGGGGCGGGCCa--CAGCCg- -3'
miRNA:   3'- ucaAGgCCUCGUCCGGgcaGUCGGag -5'
19815 3' -60.5 NC_004687.1 + 81414 0.66 0.68232
Target:  5'- gGGUUCaGGGccagcauGCGGGCCUG--GGCCUCg -3'
miRNA:   3'- -UCAAGgCCU-------CGUCCGGGCagUCGGAG- -5'
19815 3' -60.5 NC_004687.1 + 19402 0.66 0.68232
Target:  5'- gGGUUCCGGuuCAugccggauacaacGGCCCGgUGGCCUUu -3'
miRNA:   3'- -UCAAGGCCucGU-------------CCGGGCaGUCGGAG- -5'
19815 3' -60.5 NC_004687.1 + 99160 0.67 0.653471
Target:  5'- --cUCCGGAuuCAGGCCgaacaUGUCAGCCa- -3'
miRNA:   3'- ucaAGGCCUc-GUCCGG-----GCAGUCGGag -5'
19815 3' -60.5 NC_004687.1 + 65585 0.67 0.647479
Target:  5'- cAGUUCCaGGAcgucaccgucgagccGCAGuuCCGUCGGCgUCg -3'
miRNA:   3'- -UCAAGG-CCU---------------CGUCcgGGCAGUCGgAG- -5'
19815 3' -60.5 NC_004687.1 + 61394 0.67 0.643482
Target:  5'- cAGUcCCGGcacucgcGCAuGGCCUGUCgGGCCUUg -3'
miRNA:   3'- -UCAaGGCCu------CGU-CCGGGCAG-UCGGAG- -5'
19815 3' -60.5 NC_004687.1 + 20094 0.67 0.643482
Target:  5'- ---aCCGGGccgcGCAGGCUCGguacaccaacCAGCCUCc -3'
miRNA:   3'- ucaaGGCCU----CGUCCGGGCa---------GUCGGAG- -5'
19815 3' -60.5 NC_004687.1 + 70641 0.67 0.633484
Target:  5'- cAGUUCauggccgcagCGGucGCGGGCaaGUCGGUCUCg -3'
miRNA:   3'- -UCAAG----------GCCu-CGUCCGggCAGUCGGAG- -5'
19815 3' -60.5 NC_004687.1 + 88065 0.67 0.633484
Target:  5'- --gUCUGGAGgAGGCCac-CAGCCUg -3'
miRNA:   3'- ucaAGGCCUCgUCCGGgcaGUCGGAg -5'
19815 3' -60.5 NC_004687.1 + 52386 0.67 0.623485
Target:  5'- ----aCGGAGCcccAGGCCUGcCAGCCg- -3'
miRNA:   3'- ucaagGCCUCG---UCCGGGCaGUCGGag -5'
19815 3' -60.5 NC_004687.1 + 6656 0.68 0.593554
Target:  5'- -cUUCCGGcGCgacAGGUCCGUCAGUggcugCUCa -3'
miRNA:   3'- ucAAGGCCuCG---UCCGGGCAGUCG-----GAG- -5'
19815 3' -60.5 NC_004687.1 + 44999 0.68 0.582631
Target:  5'- cGggCCGGAcgaucucGguGGCCuCGUaGGCCUCg -3'
miRNA:   3'- uCaaGGCCU-------CguCCGG-GCAgUCGGAG- -5'
19815 3' -60.5 NC_004687.1 + 148343 0.68 0.573723
Target:  5'- cAGUUCaacucGGCGGGCCUGaUCAGCCa- -3'
miRNA:   3'- -UCAAGgcc--UCGUCCGGGC-AGUCGGag -5'
19815 3' -60.5 NC_004687.1 + 73757 0.68 0.563864
Target:  5'- ---aCCGGcggcAGCGGGCCCGgCGGCUacUCg -3'
miRNA:   3'- ucaaGGCC----UCGUCCGGGCaGUCGG--AG- -5'
19815 3' -60.5 NC_004687.1 + 13745 0.68 0.563864
Target:  5'- aAGgccCUGGAGCAGGCCaacCAGCgUCu -3'
miRNA:   3'- -UCaa-GGCCUCGUCCGGgcaGUCGgAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.