miRNA display CGI


Results 1 - 20 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19815 5' -53.3 NC_004687.1 + 90320 0.66 0.967226
Target:  5'- ----cGACGCCGacgGaacUGCGGCUCGAc- -3'
miRNA:   3'- auuuuCUGCGGUa--C---ACGCCGGGCUug -5'
19815 5' -53.3 NC_004687.1 + 75652 0.66 0.963899
Target:  5'- cGAGAGACaCC-UGUcCGGCCuCGGGCu -3'
miRNA:   3'- aUUUUCUGcGGuACAcGCCGG-GCUUG- -5'
19815 5' -53.3 NC_004687.1 + 117165 0.66 0.963899
Target:  5'- ---uAGGCGCCAccgGUGCcGCCgGAGa -3'
miRNA:   3'- auuuUCUGCGGUa--CACGcCGGgCUUg -5'
19815 5' -53.3 NC_004687.1 + 99719 0.66 0.963899
Target:  5'- uUGAAAGACuugGgCAUGUGgccgGGCUCGGGCa -3'
miRNA:   3'- -AUUUUCUG---CgGUACACg---CCGGGCUUG- -5'
19815 5' -53.3 NC_004687.1 + 40431 0.66 0.963899
Target:  5'- ----uGACGCC---UGCGGCCUGGc- -3'
miRNA:   3'- auuuuCUGCGGuacACGCCGGGCUug -5'
19815 5' -53.3 NC_004687.1 + 70288 0.66 0.963899
Target:  5'- ---uAGAUGCCGgucaGCGcGCCCGAGa -3'
miRNA:   3'- auuuUCUGCGGUaca-CGC-CGGGCUUg -5'
19815 5' -53.3 NC_004687.1 + 91101 0.66 0.963899
Target:  5'- -cGGAGuCGaCCGUGUGggucgcguacCGGCCCGGGg -3'
miRNA:   3'- auUUUCuGC-GGUACAC----------GCCGGGCUUg -5'
19815 5' -53.3 NC_004687.1 + 136915 0.66 0.963899
Target:  5'- ----cGAUGCCGUGcucaagGUGGCgCCGAGu -3'
miRNA:   3'- auuuuCUGCGGUACa-----CGCCG-GGCUUg -5'
19815 5' -53.3 NC_004687.1 + 131283 0.66 0.963554
Target:  5'- cGGGAGGCcucgggcgcguugGCCAUGgucaucGCGGCcaCCGAGCc -3'
miRNA:   3'- aUUUUCUG-------------CGGUACa-----CGCCG--GGCUUG- -5'
19815 5' -53.3 NC_004687.1 + 130134 0.66 0.960342
Target:  5'- ----cGAC-CCAggcggGcGCGGCCUGAGCg -3'
miRNA:   3'- auuuuCUGcGGUa----CaCGCCGGGCUUG- -5'
19815 5' -53.3 NC_004687.1 + 87075 0.66 0.960342
Target:  5'- ---cGGAUGCCGUGcGUGG-CCGAGg -3'
miRNA:   3'- auuuUCUGCGGUACaCGCCgGGCUUg -5'
19815 5' -53.3 NC_004687.1 + 130828 0.66 0.956551
Target:  5'- ---uGGGCGCCGUcGUGCGccucaucgaGgCCGGGCa -3'
miRNA:   3'- auuuUCUGCGGUA-CACGC---------CgGGCUUG- -5'
19815 5' -53.3 NC_004687.1 + 7146 0.66 0.956551
Target:  5'- ---uGGugGCCGU-UGCGGCgCGAu- -3'
miRNA:   3'- auuuUCugCGGUAcACGCCGgGCUug -5'
19815 5' -53.3 NC_004687.1 + 53008 0.66 0.956551
Target:  5'- gUGGucGACGUCAagggaUGgcUGCGGCCUGAGu -3'
miRNA:   3'- -AUUuuCUGCGGU-----AC--ACGCCGGGCUUg -5'
19815 5' -53.3 NC_004687.1 + 128415 0.66 0.956551
Target:  5'- ---uGGACGCC-UGccGCcaaggcccuuccGGCCCGAACu -3'
miRNA:   3'- auuuUCUGCGGuACa-CG------------CCGGGCUUG- -5'
19815 5' -53.3 NC_004687.1 + 57199 0.66 0.956551
Target:  5'- ----cGugGCCAaG-GUGGCUCGGGCc -3'
miRNA:   3'- auuuuCugCGGUaCaCGCCGGGCUUG- -5'
19815 5' -53.3 NC_004687.1 + 17270 0.66 0.948246
Target:  5'- gGAccGACGaUCAgcugcGUGCGGCCUGGAa -3'
miRNA:   3'- aUUuuCUGC-GGUa----CACGCCGGGCUUg -5'
19815 5' -53.3 NC_004687.1 + 81586 0.66 0.948246
Target:  5'- ---cGGugGUCGUG-GCGGCaCCGGc- -3'
miRNA:   3'- auuuUCugCGGUACaCGCCG-GGCUug -5'
19815 5' -53.3 NC_004687.1 + 24580 0.66 0.948246
Target:  5'- --cAGGACaCCAUGcgcGCGGCCaaCGAGCu -3'
miRNA:   3'- auuUUCUGcGGUACa--CGCCGG--GCUUG- -5'
19815 5' -53.3 NC_004687.1 + 82145 0.66 0.948246
Target:  5'- --cAGGugGCCGUGgcggugGCGGCggCGGAUa -3'
miRNA:   3'- auuUUCugCGGUACa-----CGCCGg-GCUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.