miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19817 3' -57.9 NC_004687.1 + 90111 0.66 0.834774
Target:  5'- cGCCUGc-GCGCAgCGCgucaccgggacGGAAGCCCGg -3'
miRNA:   3'- cUGGACcaUGCGU-GCGa----------CCUUCGGGU- -5'
19817 3' -57.9 NC_004687.1 + 121226 0.66 0.83395
Target:  5'- cGAUCUGGgacGCGCAgcucuCGCUGGGucugcacGGCaCCGg -3'
miRNA:   3'- -CUGGACCa--UGCGU-----GCGACCU-------UCG-GGU- -5'
19817 3' -57.9 NC_004687.1 + 140881 0.66 0.829801
Target:  5'- aGACCUcGGUACGUccagccuuggcggcgGCGUcgaagcuggugUGGAAGCuCCGc -3'
miRNA:   3'- -CUGGA-CCAUGCG---------------UGCG-----------ACCUUCG-GGU- -5'
19817 3' -57.9 NC_004687.1 + 96070 0.66 0.82645
Target:  5'- uGCCUGGUauugagGCGCuccugcCGCcaaGAAGCCCAc -3'
miRNA:   3'- cUGGACCA------UGCGu-----GCGac-CUUCGGGU- -5'
19817 3' -57.9 NC_004687.1 + 50360 0.66 0.81795
Target:  5'- gGGCCUGGUgcagggcgcacaGCGCAcCGCcGGAcGCgCAg -3'
miRNA:   3'- -CUGGACCA------------UGCGU-GCGaCCUuCGgGU- -5'
19817 3' -57.9 NC_004687.1 + 82282 0.66 0.81795
Target:  5'- cGCCUGGUugGCcCGCUcggugaugaccgGGAccugguugagguAGUCCAg -3'
miRNA:   3'- cUGGACCAugCGuGCGA------------CCU------------UCGGGU- -5'
19817 3' -57.9 NC_004687.1 + 58215 0.66 0.814503
Target:  5'- uGGCCUGccaccgacgaugACGaugaGCUGGAGGCCCGg -3'
miRNA:   3'- -CUGGACca----------UGCgug-CGACCUUCGGGU- -5'
19817 3' -57.9 NC_004687.1 + 9800 0.66 0.809283
Target:  5'- gGACCcaUGGgaaaugGCGC-CGCcGGGuAGCCCAc -3'
miRNA:   3'- -CUGG--ACCa-----UGCGuGCGaCCU-UCGGGU- -5'
19817 3' -57.9 NC_004687.1 + 101084 0.66 0.800457
Target:  5'- aGACCUGG---GCGCGCUGGccGCacaCCGg -3'
miRNA:   3'- -CUGGACCaugCGUGCGACCuuCG---GGU- -5'
19817 3' -57.9 NC_004687.1 + 138971 0.66 0.800457
Target:  5'- gGACCUGGagcucgGCgGCGgcaGC-GGAGGCCCGg -3'
miRNA:   3'- -CUGGACCa-----UG-CGUg--CGaCCUUCGGGU- -5'
19817 3' -57.9 NC_004687.1 + 88149 0.66 0.800457
Target:  5'- -cCCUGGUGCuCAaGCUGGAGGacuaCCGc -3'
miRNA:   3'- cuGGACCAUGcGUgCGACCUUCg---GGU- -5'
19817 3' -57.9 NC_004687.1 + 76983 0.66 0.800457
Target:  5'- -uCCUcGUucgGCGCGCaCUGGAAGUCCAu -3'
miRNA:   3'- cuGGAcCA---UGCGUGcGACCUUCGGGU- -5'
19817 3' -57.9 NC_004687.1 + 92524 0.66 0.800457
Target:  5'- gGACCUGGUGCGuCAUGCccGGucgGGCgUAc -3'
miRNA:   3'- -CUGGACCAUGC-GUGCGa-CCu--UCGgGU- -5'
19817 3' -57.9 NC_004687.1 + 72394 0.66 0.800457
Target:  5'- cACCcgGGUcaGCuGCGgGCUGGA-GCCCGa -3'
miRNA:   3'- cUGGa-CCA--UG-CGUgCGACCUuCGGGU- -5'
19817 3' -57.9 NC_004687.1 + 106384 0.66 0.800457
Target:  5'- cGGCCUcGUugGCcaugcgACGCUGGcgcuGAGCCUg -3'
miRNA:   3'- -CUGGAcCAugCG------UGCGACC----UUCGGGu -5'
19817 3' -57.9 NC_004687.1 + 48439 0.66 0.800457
Target:  5'- cGCC-GGUGCGCGuggcgUGCUGG--GCCCGg -3'
miRNA:   3'- cUGGaCCAUGCGU-----GCGACCuuCGGGU- -5'
19817 3' -57.9 NC_004687.1 + 89702 0.66 0.800457
Target:  5'- cGGCCUGGUucCGgGuccUGCUGGAGGUgaCCAa -3'
miRNA:   3'- -CUGGACCAu-GCgU---GCGACCUUCG--GGU- -5'
19817 3' -57.9 NC_004687.1 + 104699 0.67 0.791481
Target:  5'- -cCCUGGUaACGCAgcuggaGCUGGAucgGGCCg- -3'
miRNA:   3'- cuGGACCA-UGCGUg-----CGACCU---UCGGgu -5'
19817 3' -57.9 NC_004687.1 + 21817 0.67 0.791481
Target:  5'- aGGCCUGGc-UGCACGac-GAGGCCCu -3'
miRNA:   3'- -CUGGACCauGCGUGCgacCUUCGGGu -5'
19817 3' -57.9 NC_004687.1 + 51391 0.67 0.790575
Target:  5'- cGACCUGGguggccaGCGCGCGgaGGAcuuugacGGUgCCAa -3'
miRNA:   3'- -CUGGACCa------UGCGUGCgaCCU-------UCG-GGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.