miRNA display CGI


Results 21 - 40 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19817 3' -57.9 NC_004687.1 + 64229 0.67 0.782362
Target:  5'- cGGCCaGGUAgGcCugGCgaUGGAAGUCCu -3'
miRNA:   3'- -CUGGaCCAUgC-GugCG--ACCUUCGGGu -5'
19817 3' -57.9 NC_004687.1 + 11800 0.67 0.77311
Target:  5'- cACCagGGaGCGCGCuGCUGGAAGaCgCCGa -3'
miRNA:   3'- cUGGa-CCaUGCGUG-CGACCUUC-G-GGU- -5'
19817 3' -57.9 NC_004687.1 + 48256 0.67 0.77311
Target:  5'- gGGCC-GGUGCGCACGUagu-AGUCCAg -3'
miRNA:   3'- -CUGGaCCAUGCGUGCGaccuUCGGGU- -5'
19817 3' -57.9 NC_004687.1 + 139664 0.67 0.77311
Target:  5'- gGGCUaGGcguCGCGCGC-GGggGUCCAg -3'
miRNA:   3'- -CUGGaCCau-GCGUGCGaCCuuCGGGU- -5'
19817 3' -57.9 NC_004687.1 + 85356 0.67 0.77311
Target:  5'- cGACCUacaccgcgcucGGUAU-CGCGCUGGgcGCCUu -3'
miRNA:   3'- -CUGGA-----------CCAUGcGUGCGACCuuCGGGu -5'
19817 3' -57.9 NC_004687.1 + 127034 0.67 0.772177
Target:  5'- -uCCUGGauauagcUGCGCAUGUUGGAcgcGUCCAu -3'
miRNA:   3'- cuGGACC-------AUGCGUGCGACCUu--CGGGU- -5'
19817 3' -57.9 NC_004687.1 + 76127 0.67 0.763733
Target:  5'- cGACCaGGUugagGCGCAUGCccgGGAAGaCCUc -3'
miRNA:   3'- -CUGGaCCA----UGCGUGCGa--CCUUC-GGGu -5'
19817 3' -57.9 NC_004687.1 + 31712 0.67 0.754241
Target:  5'- cGACCUGGUcucugGCGC-CGCacUGGGccuGCUCAa -3'
miRNA:   3'- -CUGGACCA-----UGCGuGCG--ACCUu--CGGGU- -5'
19817 3' -57.9 NC_004687.1 + 115640 0.68 0.734945
Target:  5'- aACCUGuGgGCGCuguccuCGCUGGccuacGAGCCCGa -3'
miRNA:   3'- cUGGAC-CaUGCGu-----GCGACC-----UUCGGGU- -5'
19817 3' -57.9 NC_004687.1 + 68676 0.68 0.734945
Target:  5'- uGCCaGGUcGCGCGCGCgGGuGAGCCgGa -3'
miRNA:   3'- cUGGaCCA-UGCGUGCGaCC-UUCGGgU- -5'
19817 3' -57.9 NC_004687.1 + 143364 0.68 0.734945
Target:  5'- cGGCCUGGUcgaGCA-GCUGGucGGCCUu -3'
miRNA:   3'- -CUGGACCAug-CGUgCGACCu-UCGGGu -5'
19817 3' -57.9 NC_004687.1 + 68251 0.68 0.72516
Target:  5'- aACCgGGUGauCGCACGCcgGGcGGUCCAg -3'
miRNA:   3'- cUGGaCCAU--GCGUGCGa-CCuUCGGGU- -5'
19817 3' -57.9 NC_004687.1 + 149781 0.68 0.72516
Target:  5'- -gUCUGGUGCGC-CGgaCUGGccacAGCCCAg -3'
miRNA:   3'- cuGGACCAUGCGuGC--GACCu---UCGGGU- -5'
19817 3' -57.9 NC_004687.1 + 69732 0.68 0.715295
Target:  5'- gGGCCaGGUGCagaGCGCGCUGcGcgcacuGCCCAa -3'
miRNA:   3'- -CUGGaCCAUG---CGUGCGAC-Cuu----CGGGU- -5'
19817 3' -57.9 NC_004687.1 + 20283 0.68 0.695365
Target:  5'- aGACCguccGG-ACcCAUgGCUGGAAGCCCGa -3'
miRNA:   3'- -CUGGa---CCaUGcGUG-CGACCUUCGGGU- -5'
19817 3' -57.9 NC_004687.1 + 112106 0.68 0.695365
Target:  5'- cGACCgacGUAgGUcauccgGCGCUGGAAGgCCCAc -3'
miRNA:   3'- -CUGGac-CAUgCG------UGCGACCUUC-GGGU- -5'
19817 3' -57.9 NC_004687.1 + 66927 0.68 0.685317
Target:  5'- uGGCCgGGaUGCGCA-GCUGuuGGCCCGg -3'
miRNA:   3'- -CUGGaCC-AUGCGUgCGACcuUCGGGU- -5'
19817 3' -57.9 NC_004687.1 + 82297 0.68 0.684309
Target:  5'- gGACCUGGUGCaacgcgguucccaGCugGC-GGucGUCCAg -3'
miRNA:   3'- -CUGGACCAUG-------------CGugCGaCCuuCGGGU- -5'
19817 3' -57.9 NC_004687.1 + 141217 0.69 0.675225
Target:  5'- cGACCacccagcggUGG-ACGCGCGgaccCUGGgcGCCCAa -3'
miRNA:   3'- -CUGG---------ACCaUGCGUGC----GACCuuCGGGU- -5'
19817 3' -57.9 NC_004687.1 + 131200 0.69 0.665098
Target:  5'- aGCCUGccaacaaGCGCACGCUGcuGGCCCu -3'
miRNA:   3'- cUGGACca-----UGCGUGCGACcuUCGGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.