miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19817 5' -50.5 NC_004687.1 + 18335 0.66 0.996513
Target:  5'- aCCAGGUugaACacgaccgugUUCUUUucguugGUGAGCAGGaCCu -3'
miRNA:   3'- aGGUCCA---UG---------AAGAAG------CACUUGUCC-GG- -5'
19817 5' -50.5 NC_004687.1 + 80535 0.66 0.996513
Target:  5'- gCC-GGUGCagag-CGUG-GCAGGCCg -3'
miRNA:   3'- aGGuCCAUGaagaaGCACuUGUCCGG- -5'
19817 5' -50.5 NC_004687.1 + 46169 0.66 0.996513
Target:  5'- gCCGgacGGcACUacUCgccgUCG-GAGCAGGCCg -3'
miRNA:   3'- aGGU---CCaUGA--AGa---AGCaCUUGUCCGG- -5'
19817 5' -50.5 NC_004687.1 + 89710 0.66 0.996513
Target:  5'- uUCCGGGUcCUgCUggagGUGAccaacCAGGCCa -3'
miRNA:   3'- -AGGUCCAuGAaGAag--CACUu----GUCCGG- -5'
19817 5' -50.5 NC_004687.1 + 21660 0.66 0.996513
Target:  5'- gCCAGGUG--UCgUCGUcGAACAGGa- -3'
miRNA:   3'- aGGUCCAUgaAGaAGCA-CUUGUCCgg -5'
19817 5' -50.5 NC_004687.1 + 67043 0.66 0.996513
Target:  5'- uUCCAGGgcacgUCg--GUGAAgUAGGCCa -3'
miRNA:   3'- -AGGUCCauga-AGaagCACUU-GUCCGG- -5'
19817 5' -50.5 NC_004687.1 + 121498 0.66 0.995503
Target:  5'- gCCAGcugauggagaucgACUUUUUCGUGc-CAGGCCu -3'
miRNA:   3'- aGGUCca-----------UGAAGAAGCACuuGUCCGG- -5'
19817 5' -50.5 NC_004687.1 + 83149 0.66 0.995216
Target:  5'- gCCGG--ACUcgaucgUCUUCGUGGGCgAGGUCg -3'
miRNA:   3'- aGGUCcaUGA------AGAAGCACUUG-UCCGG- -5'
19817 5' -50.5 NC_004687.1 + 29134 0.66 0.995216
Target:  5'- gUCCAGGc----CUUUGUGA--AGGCCg -3'
miRNA:   3'- -AGGUCCaugaaGAAGCACUugUCCGG- -5'
19817 5' -50.5 NC_004687.1 + 100090 0.66 0.993551
Target:  5'- aUCgAGGc-CUUCUUUGcUGAAgAGGCUg -3'
miRNA:   3'- -AGgUCCauGAAGAAGC-ACUUgUCCGG- -5'
19817 5' -50.5 NC_004687.1 + 46455 0.67 0.99256
Target:  5'- aCCGGGuUACcUCUacacCGUGGucaGGGCCa -3'
miRNA:   3'- aGGUCC-AUGaAGAa---GCACUug-UCCGG- -5'
19817 5' -50.5 NC_004687.1 + 13997 0.67 0.99256
Target:  5'- aUuuGGGaACccaccCGUGAGCAGGCCa -3'
miRNA:   3'- -AggUCCaUGaagaaGCACUUGUCCGG- -5'
19817 5' -50.5 NC_004687.1 + 73629 0.67 0.99256
Target:  5'- aCCAGGUcCcggUCaUCaccGAGCGGGCCa -3'
miRNA:   3'- aGGUCCAuGa--AGaAGca-CUUGUCCGG- -5'
19817 5' -50.5 NC_004687.1 + 30006 0.67 0.991451
Target:  5'- cCCAGGUGCU------UGGcCAGGCCg -3'
miRNA:   3'- aGGUCCAUGAagaagcACUuGUCCGG- -5'
19817 5' -50.5 NC_004687.1 + 121538 0.67 0.991451
Target:  5'- -gCAGGUAgUagUCgUCGUcguGCAGGCCg -3'
miRNA:   3'- agGUCCAUgA--AGaAGCAcu-UGUCCGG- -5'
19817 5' -50.5 NC_004687.1 + 88281 0.67 0.991334
Target:  5'- aCCGGaggagaaGUugUUCggcUCGUGAauGCGGGUCg -3'
miRNA:   3'- aGGUC-------CAugAAGa--AGCACU--UGUCCGG- -5'
19817 5' -50.5 NC_004687.1 + 27128 0.67 0.990973
Target:  5'- gUCCAGGc-CUUCgagacccugcucgUCGccGACGGGCCg -3'
miRNA:   3'- -AGGUCCauGAAGa------------AGCacUUGUCCGG- -5'
19817 5' -50.5 NC_004687.1 + 5893 0.67 0.990216
Target:  5'- aCCAGGUGCcggaUCGUcGACAcgucGGCCa -3'
miRNA:   3'- aGGUCCAUGaagaAGCAcUUGU----CCGG- -5'
19817 5' -50.5 NC_004687.1 + 34762 0.67 0.987328
Target:  5'- gCCAGG-AgUUCacCGUccccGAGCAGGCCc -3'
miRNA:   3'- aGGUCCaUgAAGaaGCA----CUUGUCCGG- -5'
19817 5' -50.5 NC_004687.1 + 97115 0.67 0.987328
Target:  5'- cCCAGGUGUgggUCggcgggUCGUacGGCGGGCCg -3'
miRNA:   3'- aGGUCCAUGa--AGa-----AGCAc-UUGUCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.