miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19825 3' -51 NC_004687.1 + 37247 0.66 0.992981
Target:  5'- aCCGUGcucagcgagGCGCCGccgccGcCGAGCUUGaUCa -3'
miRNA:   3'- -GGUACaa-------CGCGGU-----CaGCUCGAACaAG- -5'
19825 3' -51 NC_004687.1 + 113973 0.66 0.992981
Target:  5'- aCCAUGc--CGCCGGUCugcuuGGCcUGUUCg -3'
miRNA:   3'- -GGUACaacGCGGUCAGc----UCGaACAAG- -5'
19825 3' -51 NC_004687.1 + 106908 0.67 0.987951
Target:  5'- gCAUGggugGCGCCGGggCGGGCgcggGUg- -3'
miRNA:   3'- gGUACaa--CGCGGUCa-GCUCGaa--CAag -5'
19825 3' -51 NC_004687.1 + 99732 0.67 0.982621
Target:  5'- gCAUGUg--GCCGGgcUCGGGCaUGUUCg -3'
miRNA:   3'- gGUACAacgCGGUC--AGCUCGaACAAG- -5'
19825 3' -51 NC_004687.1 + 93229 0.67 0.980498
Target:  5'- ---cGUUGCGCUGGUacgcagccgaCGAGCU-GUUCc -3'
miRNA:   3'- gguaCAACGCGGUCA----------GCUCGAaCAAG- -5'
19825 3' -51 NC_004687.1 + 29864 0.68 0.978189
Target:  5'- gCAUGUUGgGCCGGUgGAuGCUg---- -3'
miRNA:   3'- gGUACAACgCGGUCAgCU-CGAacaag -5'
19825 3' -51 NC_004687.1 + 8025 0.68 0.972972
Target:  5'- ---cGggGUGCCcuuggGGUCGGGCUUGUa- -3'
miRNA:   3'- gguaCaaCGCGG-----UCAGCUCGAACAag -5'
19825 3' -51 NC_004687.1 + 66893 0.7 0.943121
Target:  5'- aCCGUGgagGUGUCGGUC-AGCUUGgaCa -3'
miRNA:   3'- -GGUACaa-CGCGGUCAGcUCGAACaaG- -5'
19825 3' -51 NC_004687.1 + 100047 0.7 0.927863
Target:  5'- gCCGUa--GCGCCAGUCcGGCUugccggUGUUCg -3'
miRNA:   3'- -GGUAcaaCGCGGUCAGcUCGA------ACAAG- -5'
19825 3' -51 NC_004687.1 + 61678 0.72 0.875993
Target:  5'- cCCGUGUUGC-CCuguAGUCGAGCUa---- -3'
miRNA:   3'- -GGUACAACGcGG---UCAGCUCGAacaag -5'
19825 3' -51 NC_004687.1 + 149487 0.72 0.844321
Target:  5'- gCAUGaccGCGCC-GUCGGGCUcguagUGUUCg -3'
miRNA:   3'- gGUACaa-CGCGGuCAGCUCGA-----ACAAG- -5'
19825 3' -51 NC_004687.1 + 15136 0.74 0.781268
Target:  5'- -gGUGUUGaCGCCGGUCGGGCg----- -3'
miRNA:   3'- ggUACAAC-GCGGUCAGCUCGaacaag -5'
19825 3' -51 NC_004687.1 + 91374 0.74 0.771609
Target:  5'- gCAUGaugGCGCCGGUCGAGCcc-UUCc -3'
miRNA:   3'- gGUACaa-CGCGGUCAGCUCGaacAAG- -5'
19825 3' -51 NC_004687.1 + 7022 0.76 0.679885
Target:  5'- cCCAUGUuccgcUGCGcCCGGcUGAGCUUGUUg -3'
miRNA:   3'- -GGUACA-----ACGC-GGUCaGCUCGAACAAg -5'
19825 3' -51 NC_004687.1 + 42356 0.78 0.584655
Target:  5'- gCgAUGUUGCGCaccCGGUUGAGCUUGUcCa -3'
miRNA:   3'- -GgUACAACGCG---GUCAGCUCGAACAaG- -5'
19825 3' -51 NC_004687.1 + 77547 1.13 0.004875
Target:  5'- uCCAUGUUGCGCCAGUCGAGCUUGUUCa -3'
miRNA:   3'- -GGUACAACGCGGUCAGCUCGAACAAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.