miRNA display CGI


Results 1 - 20 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19825 5' -59.2 NC_004687.1 + 45496 0.66 0.824664
Target:  5'- gAGGAugGc-CCCGCCGuagccCUCGUGCa- -3'
miRNA:   3'- -UCCUugUacGGGCGGCu----GAGCGCGcc -5'
19825 5' -59.2 NC_004687.1 + 63629 0.66 0.824664
Target:  5'- uGGcucuCAUGgCCGCUGGCgacagCGCGCuGGc -3'
miRNA:   3'- uCCuu--GUACgGGCGGCUGa----GCGCG-CC- -5'
19825 5' -59.2 NC_004687.1 + 90224 0.66 0.824664
Target:  5'- uGGAAgAagGCCucgcCGCCGACg-GUGCGGg -3'
miRNA:   3'- uCCUUgUa-CGG----GCGGCUGagCGCGCC- -5'
19825 5' -59.2 NC_004687.1 + 114559 0.66 0.824664
Target:  5'- gAGGAcCAUGCgUG-CGAcCUCGCGCa- -3'
miRNA:   3'- -UCCUuGUACGgGCgGCU-GAGCGCGcc -5'
19825 5' -59.2 NC_004687.1 + 141229 0.66 0.824664
Target:  5'- cGGGAUAUGCCCGCagaucauuccCGAcCUgGUGUGu -3'
miRNA:   3'- uCCUUGUACGGGCG----------GCU-GAgCGCGCc -5'
19825 5' -59.2 NC_004687.1 + 63504 0.66 0.824664
Target:  5'- -cGAGCAgGaCUCGCUGGaccgCGCGCGGg -3'
miRNA:   3'- ucCUUGUaC-GGGCGGCUga--GCGCGCC- -5'
19825 5' -59.2 NC_004687.1 + 116851 0.66 0.82219
Target:  5'- uGGAAC-UGCCCgaggacgaggacccGCCGACUUGgGgCGa -3'
miRNA:   3'- uCCUUGuACGGG--------------CGGCUGAGCgC-GCc -5'
19825 5' -59.2 NC_004687.1 + 92861 0.66 0.81636
Target:  5'- uGGAagACgAUGUcgcggcucuCCGCCGACUCGgugagcUGCGGg -3'
miRNA:   3'- uCCU--UG-UACG---------GGCGGCUGAGC------GCGCC- -5'
19825 5' -59.2 NC_004687.1 + 17116 0.66 0.81636
Target:  5'- cGGAcGCAUGaCUCG-CGGCgUGCGCGGu -3'
miRNA:   3'- uCCU-UGUAC-GGGCgGCUGaGCGCGCC- -5'
19825 5' -59.2 NC_004687.1 + 74171 0.66 0.81636
Target:  5'- -cGGACGc-CCCGCCGugGCagCGCGCGGu -3'
miRNA:   3'- ucCUUGUacGGGCGGC--UGa-GCGCGCC- -5'
19825 5' -59.2 NC_004687.1 + 91022 0.66 0.81636
Target:  5'- uGGGccCGcGCCgCGCCGAggcccaCGCGCGGg -3'
miRNA:   3'- -UCCuuGUaCGG-GCGGCUga----GCGCGCC- -5'
19825 5' -59.2 NC_004687.1 + 32192 0.66 0.81636
Target:  5'- uGGGAccccgacaagcACAacCCUGCCGACUCGCuGaUGGg -3'
miRNA:   3'- -UCCU-----------UGUacGGGCGGCUGAGCG-C-GCC- -5'
19825 5' -59.2 NC_004687.1 + 91564 0.66 0.81636
Target:  5'- cGGGAAgAUGCgCCGCgCGAU--GCaGCGGu -3'
miRNA:   3'- -UCCUUgUACG-GGCG-GCUGagCG-CGCC- -5'
19825 5' -59.2 NC_004687.1 + 36234 0.66 0.81552
Target:  5'- cGGGuAUGUcaccgacGCCCGUCGgcaguucaucuGCUCGUGCGGc -3'
miRNA:   3'- -UCCuUGUA-------CGGGCGGC-----------UGAGCGCGCC- -5'
19825 5' -59.2 NC_004687.1 + 38676 0.66 0.812993
Target:  5'- cGaGAGCGUGCCCaaccucgacGCCGACUacgaccgcaucgaGCGCa- -3'
miRNA:   3'- uC-CUUGUACGGG---------CGGCUGAg------------CGCGcc -5'
19825 5' -59.2 NC_004687.1 + 39895 0.66 0.807898
Target:  5'- cGGuGGACAUGUCC-CaGA-UCGCGCGGg -3'
miRNA:   3'- -UC-CUUGUACGGGcGgCUgAGCGCGCC- -5'
19825 5' -59.2 NC_004687.1 + 93171 0.66 0.807898
Target:  5'- uGGcGAACAgggUGCCgGUCGAUucacgcaguUCGCGCaGGg -3'
miRNA:   3'- -UC-CUUGU---ACGGgCGGCUG---------AGCGCG-CC- -5'
19825 5' -59.2 NC_004687.1 + 61139 0.66 0.807898
Target:  5'- uGGAACgGUGCCgccagcUGCgGGCUUGgGUGGg -3'
miRNA:   3'- uCCUUG-UACGG------GCGgCUGAGCgCGCC- -5'
19825 5' -59.2 NC_004687.1 + 145373 0.66 0.807898
Target:  5'- uGGGcGGCAUGgCCGCUGugUUGC-UGGc -3'
miRNA:   3'- -UCC-UUGUACgGGCGGCugAGCGcGCC- -5'
19825 5' -59.2 NC_004687.1 + 50290 0.66 0.799287
Target:  5'- uGGccGCA-GCUCGCCGACaggUCGCcaGCGGu -3'
miRNA:   3'- uCCu-UGUaCGGGCGGCUG---AGCG--CGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.