miRNA display CGI


Results 21 - 40 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19825 5' -59.2 NC_004687.1 + 43398 0.66 0.799287
Target:  5'- aGGGGACcgGCacugCUGCCgGACUCG-GCGa -3'
miRNA:   3'- -UCCUUGuaCG----GGCGG-CUGAGCgCGCc -5'
19825 5' -59.2 NC_004687.1 + 50290 0.66 0.799287
Target:  5'- uGGccGCA-GCUCGCCGACaggUCGCcaGCGGu -3'
miRNA:   3'- uCCu-UGUaCGGGCGGCUG---AGCG--CGCC- -5'
19825 5' -59.2 NC_004687.1 + 141642 0.66 0.799287
Target:  5'- cAGGcucCA-GCCgCGCCG-CUCGCGCa- -3'
miRNA:   3'- -UCCuu-GUaCGG-GCGGCuGAGCGCGcc -5'
19825 5' -59.2 NC_004687.1 + 5766 0.66 0.790535
Target:  5'- gAGGcguGC-UGCCCGaCCGGCUCGaa-GGa -3'
miRNA:   3'- -UCCu--UGuACGGGC-GGCUGAGCgcgCC- -5'
19825 5' -59.2 NC_004687.1 + 27247 0.66 0.790535
Target:  5'- gAGGGG-AUGaCCGCCGACgUGCGCa- -3'
miRNA:   3'- -UCCUUgUACgGGCGGCUGaGCGCGcc -5'
19825 5' -59.2 NC_004687.1 + 125959 0.66 0.790535
Target:  5'- uGGAcaaGUGCCCGCCGG-UCGCcaaGGc -3'
miRNA:   3'- uCCUug-UACGGGCGGCUgAGCGcg-CC- -5'
19825 5' -59.2 NC_004687.1 + 77633 0.66 0.781648
Target:  5'- uGGGACccggGCCUGCCGgACUCGa-UGGg -3'
miRNA:   3'- uCCUUGua--CGGGCGGC-UGAGCgcGCC- -5'
19825 5' -59.2 NC_004687.1 + 116373 0.66 0.781648
Target:  5'- cGGGGCGUugcccgGCCCGgCGACgccaggCGC-CGGg -3'
miRNA:   3'- uCCUUGUA------CGGGCgGCUGa-----GCGcGCC- -5'
19825 5' -59.2 NC_004687.1 + 80842 0.66 0.781648
Target:  5'- -uGGGCAUGCCUGa-GACcagUCGCGCGa -3'
miRNA:   3'- ucCUUGUACGGGCggCUG---AGCGCGCc -5'
19825 5' -59.2 NC_004687.1 + 70687 0.66 0.781648
Target:  5'- cGGc-CAUGCC-GCUGACUCGCaaGGu -3'
miRNA:   3'- uCCuuGUACGGgCGGCUGAGCGcgCC- -5'
19825 5' -59.2 NC_004687.1 + 21841 0.66 0.781648
Target:  5'- -uGGAUAUGgcgcaCCGCUGGCU-GCGCGGu -3'
miRNA:   3'- ucCUUGUACg----GGCGGCUGAgCGCGCC- -5'
19825 5' -59.2 NC_004687.1 + 68655 0.66 0.780753
Target:  5'- cGGGAACggggugucggccaGUGCCagGUCG-CgCGCGCGGg -3'
miRNA:   3'- -UCCUUG-------------UACGGg-CGGCuGaGCGCGCC- -5'
19825 5' -59.2 NC_004687.1 + 149708 0.67 0.772636
Target:  5'- cGGuGCuUGCCCggGCCGAUcuggUCGCGCa- -3'
miRNA:   3'- uCCuUGuACGGG--CGGCUG----AGCGCGcc -5'
19825 5' -59.2 NC_004687.1 + 154053 0.67 0.772636
Target:  5'- aAGGccUAcGCCCGaggCGGCUCGUGUGGc -3'
miRNA:   3'- -UCCuuGUaCGGGCg--GCUGAGCGCGCC- -5'
19825 5' -59.2 NC_004687.1 + 103381 0.67 0.772636
Target:  5'- cGGcGAGCAgGUCCGCUGAUUCugGCGCu- -3'
miRNA:   3'- -UC-CUUGUaCGGGCGGCUGAG--CGCGcc -5'
19825 5' -59.2 NC_004687.1 + 66219 0.67 0.772636
Target:  5'- cAGGAGCAgaUGCCCuacuaCGACgccaUGCGCGa -3'
miRNA:   3'- -UCCUUGU--ACGGGcg---GCUGa---GCGCGCc -5'
19825 5' -59.2 NC_004687.1 + 97793 0.67 0.772636
Target:  5'- gAGGGGCAUGUCUgGCCGcacuuucacaGCUCGacCGCGa -3'
miRNA:   3'- -UCCUUGUACGGG-CGGC----------UGAGC--GCGCc -5'
19825 5' -59.2 NC_004687.1 + 58779 0.67 0.768998
Target:  5'- gAGGGACAUccggagcuccccgGCCCGCCGuACgaccCGCcgacccacaccuggGCGGu -3'
miRNA:   3'- -UCCUUGUA-------------CGGGCGGC-UGa---GCG--------------CGCC- -5'
19825 5' -59.2 NC_004687.1 + 53716 0.67 0.763506
Target:  5'- aAGGAcgucuACAagGCCCuCCGGCUgaGCGUGGc -3'
miRNA:   3'- -UCCU-----UGUa-CGGGcGGCUGAg-CGCGCC- -5'
19825 5' -59.2 NC_004687.1 + 81985 0.67 0.763506
Target:  5'- gAGGAucGCcgGguucaCCGCCuGGCcgCGCGCGGc -3'
miRNA:   3'- -UCCU--UGuaCg----GGCGG-CUGa-GCGCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.