miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19828 3' -52.9 NC_004687.1 + 36325 0.66 0.972342
Target:  5'- aUCUGGAAcAGCUACgCGaUCggCGACa -3'
miRNA:   3'- aAGACCUUcUCGGUGaGCaAGa-GCUG- -5'
19828 3' -52.9 NC_004687.1 + 40658 0.66 0.969383
Target:  5'- aUUUGaGAGGAcGaCCucauGCUCGUUCUUGGCa -3'
miRNA:   3'- aAGAC-CUUCU-C-GG----UGAGCAAGAGCUG- -5'
19828 3' -52.9 NC_004687.1 + 5647 0.66 0.968139
Target:  5'- -cCUGGAAGAGCCGaUCGgcaaggagacCGACa -3'
miRNA:   3'- aaGACCUUCUCGGUgAGCaaga------GCUG- -5'
19828 3' -52.9 NC_004687.1 + 95819 0.66 0.966205
Target:  5'- cUCcGGGAGGG-CGCUCGUUUugaggccgcuUCGGCg -3'
miRNA:   3'- aAGaCCUUCUCgGUGAGCAAG----------AGCUG- -5'
19828 3' -52.9 NC_004687.1 + 51679 0.66 0.966205
Target:  5'- aUCUGGGAGAugGCCACcgcugCGgccugaUCGACc -3'
miRNA:   3'- aAGACCUUCU--CGGUGa----GCaag---AGCUG- -5'
19828 3' -52.9 NC_004687.1 + 117137 0.66 0.962801
Target:  5'- -gCUGGccaacAAGGGCCucgaCGUUCUUGACa -3'
miRNA:   3'- aaGACC-----UUCUCGGuga-GCAAGAGCUG- -5'
19828 3' -52.9 NC_004687.1 + 155877 0.66 0.962801
Target:  5'- aUCaGGGgcAGcAGCuCGCUCGggaUCUCGACg -3'
miRNA:   3'- aAGaCCU--UC-UCG-GUGAGCa--AGAGCUG- -5'
19828 3' -52.9 NC_004687.1 + 130819 0.66 0.959166
Target:  5'- cUCUGGAccaGGGGCCACcggCGUggaucagcgcCUUGACc -3'
miRNA:   3'- aAGACCU---UCUCGGUGa--GCAa---------GAGCUG- -5'
19828 3' -52.9 NC_004687.1 + 138953 0.66 0.958411
Target:  5'- -cCUGGAGG-GCCGCgUCGaggaccuggagCUCGGCg -3'
miRNA:   3'- aaGACCUUCuCGGUG-AGCaa---------GAGCUG- -5'
19828 3' -52.9 NC_004687.1 + 19499 0.67 0.946819
Target:  5'- -cCUGG-AGAGCCACggCGcgaUCGACc -3'
miRNA:   3'- aaGACCuUCUCGGUGa-GCaagAGCUG- -5'
19828 3' -52.9 NC_004687.1 + 39663 0.67 0.937349
Target:  5'- ---cGGAAG-GCCGCagCGUcCUCGGCg -3'
miRNA:   3'- aagaCCUUCuCGGUGa-GCAaGAGCUG- -5'
19828 3' -52.9 NC_004687.1 + 7182 0.68 0.902844
Target:  5'- -cCUGGAAGAucgaguGCCGCUCcaUCUCG-Cg -3'
miRNA:   3'- aaGACCUUCU------CGGUGAGcaAGAGCuG- -5'
19828 3' -52.9 NC_004687.1 + 87356 0.72 0.730783
Target:  5'- cUUCgaGGAAGAGCaGgaCGUUCUCGGCa -3'
miRNA:   3'- -AAGa-CCUUCUCGgUgaGCAAGAGCUG- -5'
19828 3' -52.9 NC_004687.1 + 102426 0.77 0.482312
Target:  5'- uUUUUGGcguAGAGCCGCUCGccgucacgggUCUCGACg -3'
miRNA:   3'- -AAGACCu--UCUCGGUGAGCa---------AGAGCUG- -5'
19828 3' -52.9 NC_004687.1 + 76362 1.08 0.005565
Target:  5'- gUUCUGGAAGAGCCACUCGUUCUCGACg -3'
miRNA:   3'- -AAGACCUUCUCGGUGAGCAAGAGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.