miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19828 5' -53.5 NC_004687.1 + 80217 0.66 0.966341
Target:  5'- gGAGUggcGGCUGGCCGGGCGcc-UGCCg -3'
miRNA:   3'- -CUCAac-UCGGUUGGUUCGCccaACGG- -5'
19828 5' -53.5 NC_004687.1 + 118259 0.66 0.966341
Target:  5'- aAGaUGAGCCuggaCGAGCaGGUgGCCg -3'
miRNA:   3'- cUCaACUCGGuug-GUUCGcCCAaCGG- -5'
19828 5' -53.5 NC_004687.1 + 84597 0.66 0.966341
Target:  5'- ---cUGAGCCccGGCCAcaggcuguGGCGGGgUGUCc -3'
miRNA:   3'- cucaACUCGG--UUGGU--------UCGCCCaACGG- -5'
19828 5' -53.5 NC_004687.1 + 125084 0.66 0.96298
Target:  5'- -cGgcGAGCCAuggauucaGCacuGGCGGGUaGCCc -3'
miRNA:   3'- cuCaaCUCGGU--------UGgu-UCGCCCAaCGG- -5'
19828 5' -53.5 NC_004687.1 + 81659 0.66 0.96298
Target:  5'- ----cGAcGCCAGaCCGAGCaGGUuauUGCCg -3'
miRNA:   3'- cucaaCU-CGGUU-GGUUCGcCCA---ACGG- -5'
19828 5' -53.5 NC_004687.1 + 153690 0.66 0.96298
Target:  5'- aGGUgucUGGGCCGaggACCAucgcGCGGGcauccaUGCCg -3'
miRNA:   3'- cUCA---ACUCGGU---UGGUu---CGCCCa-----ACGG- -5'
19828 5' -53.5 NC_004687.1 + 42469 0.66 0.961928
Target:  5'- gGGGUUGAcGCCGAuuucggcguaguacCCGuGCGGGUcgGCg -3'
miRNA:   3'- -CUCAACU-CGGUU--------------GGUuCGCCCAa-CGg -5'
19828 5' -53.5 NC_004687.1 + 63209 0.66 0.959392
Target:  5'- ---cUGGGCCAGCUucuccuuGCGGGcggaGCCg -3'
miRNA:   3'- cucaACUCGGUUGGuu-----CGCCCaa--CGG- -5'
19828 5' -53.5 NC_004687.1 + 10536 0.66 0.95902
Target:  5'- aAGUUGGcGUCGGCCAgcaacacAGCGGccaUGCCg -3'
miRNA:   3'- cUCAACU-CGGUUGGU-------UCGCCca-ACGG- -5'
19828 5' -53.5 NC_004687.1 + 91133 0.66 0.955571
Target:  5'- ----gGGGCCccggcgacGACCAAGaUGuGGUUGCCg -3'
miRNA:   3'- cucaaCUCGG--------UUGGUUC-GC-CCAACGG- -5'
19828 5' -53.5 NC_004687.1 + 23277 0.66 0.955571
Target:  5'- ----cGAGCCGACCAGG-GuGGUgaaagucggGCCg -3'
miRNA:   3'- cucaaCUCGGUUGGUUCgC-CCAa--------CGG- -5'
19828 5' -53.5 NC_004687.1 + 58192 0.66 0.955571
Target:  5'- -cGUUc-GCCAGCgAGGUGGGUuacuggccUGCCa -3'
miRNA:   3'- cuCAAcuCGGUUGgUUCGCCCA--------ACGG- -5'
19828 5' -53.5 NC_004687.1 + 88602 0.66 0.951514
Target:  5'- aGGUcgGcGGUCuGGCCGAGCGGGUgcagcuggucggUGCCg -3'
miRNA:   3'- cUCAa-C-UCGG-UUGGUUCGCCCA------------ACGG- -5'
19828 5' -53.5 NC_004687.1 + 139689 0.66 0.951514
Target:  5'- cAGgcGGGCUgGGCCAGGUGGGcgaagGCCu -3'
miRNA:   3'- cUCaaCUCGG-UUGGUUCGCCCaa---CGG- -5'
19828 5' -53.5 NC_004687.1 + 25591 0.67 0.947216
Target:  5'- aGGGcUGGGCCAACUucGCcGGGaauggcGCCg -3'
miRNA:   3'- -CUCaACUCGGUUGGuuCG-CCCaa----CGG- -5'
19828 5' -53.5 NC_004687.1 + 111851 0.67 0.947216
Target:  5'- ---cUGGGCCuggcgGGCCAAGCcGGUgGCCu -3'
miRNA:   3'- cucaACUCGG-----UUGGUUCGcCCAaCGG- -5'
19828 5' -53.5 NC_004687.1 + 35656 0.67 0.942673
Target:  5'- gGAGccgGAGCCGACCGucGGCGagaGGUUGa- -3'
miRNA:   3'- -CUCaa-CUCGGUUGGU--UCGC---CCAACgg -5'
19828 5' -53.5 NC_004687.1 + 91098 0.67 0.942673
Target:  5'- -cGUcgGAGUCGACCGuGUGGGUcGCg -3'
miRNA:   3'- cuCAa-CUCGGUUGGUuCGCCCAaCGg -5'
19828 5' -53.5 NC_004687.1 + 110145 0.67 0.942673
Target:  5'- uGGUgcucaagGAGCUGAUCAAGCGaGGccagaccugcuUUGCCa -3'
miRNA:   3'- cUCAa------CUCGGUUGGUUCGC-CC-----------AACGG- -5'
19828 5' -53.5 NC_004687.1 + 80967 0.67 0.942673
Target:  5'- cGGUUG-GCCGucaugGCCAugagcuGCGGGcugGCCa -3'
miRNA:   3'- cUCAACuCGGU-----UGGUu-----CGCCCaa-CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.