miRNA display CGI


Results 1 - 20 of 82 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19831 3' -57.7 NC_004687.1 + 150003 0.66 0.84621
Target:  5'- aUCAUGGacauggacggcacccUGGCCgacgugucgacgauCCGGC-ACCUGGUCg -3'
miRNA:   3'- cAGUGCC---------------ACCGG--------------GGUCGuUGGACUAG- -5'
19831 3' -57.7 NC_004687.1 + 109901 0.66 0.84541
Target:  5'- uGUCGCccucGGUauuGGCCgCGaugcgcauuGCGGCCUGAUCg -3'
miRNA:   3'- -CAGUG----CCA---CCGGgGU---------CGUUGGACUAG- -5'
19831 3' -57.7 NC_004687.1 + 37453 0.66 0.84541
Target:  5'- -aCACGacuUGGCCCCGGaugaGGCUUGGUa -3'
miRNA:   3'- caGUGCc--ACCGGGGUCg---UUGGACUAg -5'
19831 3' -57.7 NC_004687.1 + 972 0.66 0.84541
Target:  5'- uGUCuCGGgacgucgGGCCCCAGgAGCCg---- -3'
miRNA:   3'- -CAGuGCCa------CCGGGGUCgUUGGacuag -5'
19831 3' -57.7 NC_004687.1 + 143719 0.66 0.84541
Target:  5'- cUCGcCGGUcuGGUCCCAGC-GCUUGAg- -3'
miRNA:   3'- cAGU-GCCA--CCGGGGUCGuUGGACUag -5'
19831 3' -57.7 NC_004687.1 + 94608 0.66 0.84541
Target:  5'- -cCAUGGUGauGCCgucguuggCCAGCAccgccgcgauuGCCUGGUCg -3'
miRNA:   3'- caGUGCCAC--CGG--------GGUCGU-----------UGGACUAG- -5'
19831 3' -57.7 NC_004687.1 + 120428 0.66 0.837302
Target:  5'- -aUACGGaUGGCCUCGGCcACgUGcUCg -3'
miRNA:   3'- caGUGCC-ACCGGGGUCGuUGgACuAG- -5'
19831 3' -57.7 NC_004687.1 + 83050 0.66 0.837302
Target:  5'- cUCGCGGauaccggcGGCgCacaCAGCGACCUGGUa -3'
miRNA:   3'- cAGUGCCa-------CCG-Gg--GUCGUUGGACUAg -5'
19831 3' -57.7 NC_004687.1 + 39212 0.66 0.837302
Target:  5'- -cCGCGaGUGGgUCCGGguGCC-GAUCg -3'
miRNA:   3'- caGUGC-CACCgGGGUCguUGGaCUAG- -5'
19831 3' -57.7 NC_004687.1 + 133363 0.66 0.837302
Target:  5'- gGUCAaGGUGGUCCCggaguGGCcACCgauggugGAUCu -3'
miRNA:   3'- -CAGUgCCACCGGGG-----UCGuUGGa------CUAG- -5'
19831 3' -57.7 NC_004687.1 + 20392 0.66 0.837302
Target:  5'- -cCACGGcGGCaCCUGGCAcaucuACCUGGa- -3'
miRNA:   3'- caGUGCCaCCG-GGGUCGU-----UGGACUag -5'
19831 3' -57.7 NC_004687.1 + 88124 0.66 0.836481
Target:  5'- gGUCAgGGUGGCCgagcaugUCGGCGACgUUGAc- -3'
miRNA:   3'- -CAGUgCCACCGG-------GGUCGUUG-GACUag -5'
19831 3' -57.7 NC_004687.1 + 80635 0.66 0.82901
Target:  5'- aUCAgcuCGGcgaccgcacUGGCCCUGGCugccaaggccGACCUGGUCu -3'
miRNA:   3'- cAGU---GCC---------ACCGGGGUCG----------UUGGACUAG- -5'
19831 3' -57.7 NC_004687.1 + 88314 0.66 0.82901
Target:  5'- gGUCgGCGGguccucggGGUCCCAGCcgcgauGCCaGGUCg -3'
miRNA:   3'- -CAG-UGCCa-------CCGGGGUCGu-----UGGaCUAG- -5'
19831 3' -57.7 NC_004687.1 + 120479 0.66 0.82901
Target:  5'- aUCAUcaUGGCCUCGGCccGCUUGGUCa -3'
miRNA:   3'- cAGUGccACCGGGGUCGu-UGGACUAG- -5'
19831 3' -57.7 NC_004687.1 + 86725 0.66 0.82901
Target:  5'- gGUCugGGUGGCCugcccgCCGGggauGACCUcGUCg -3'
miRNA:   3'- -CAGugCCACCGG------GGUCg---UUGGAcUAG- -5'
19831 3' -57.7 NC_004687.1 + 9568 0.66 0.82901
Target:  5'- uUCACGGUucggguuGCCCCAcGCGACUgccuugagcacgUGAUCc -3'
miRNA:   3'- cAGUGCCAc------CGGGGU-CGUUGG------------ACUAG- -5'
19831 3' -57.7 NC_004687.1 + 61520 0.66 0.823948
Target:  5'- aUCACGGccuccgacaucuccGGCCUgAGCGACCUGu-- -3'
miRNA:   3'- cAGUGCCa-------------CCGGGgUCGUUGGACuag -5'
19831 3' -57.7 NC_004687.1 + 10889 0.66 0.820538
Target:  5'- uGUC-UGGUGuaCCCGGCAGCaCgccGAUCg -3'
miRNA:   3'- -CAGuGCCACcgGGGUCGUUG-Ga--CUAG- -5'
19831 3' -57.7 NC_004687.1 + 142660 0.66 0.820538
Target:  5'- -aCACGGUGcuGCUgaCCGGUAACCgcgUGGUCa -3'
miRNA:   3'- caGUGCCAC--CGG--GGUCGUUGG---ACUAG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.