miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19831 5' -60 NC_004687.1 + 101563 0.66 0.765458
Target:  5'- -cGGCCUGGGacucccgggcgGuCUGGCCGgUGCCGu -3'
miRNA:   3'- caCUGGACCCa----------C-GGCUGGUgACGGCu -5'
19831 5' -60 NC_004687.1 + 74964 0.66 0.765458
Target:  5'- uUGcCCUGGGUGaCGGugcCCGCUgcgucGCCGAa -3'
miRNA:   3'- cACuGGACCCACgGCU---GGUGA-----CGGCU- -5'
19831 5' -60 NC_004687.1 + 102129 0.66 0.765458
Target:  5'- uUGGCCUcGcGGcggGCCuuGGCCGCUGCCu- -3'
miRNA:   3'- cACUGGA-C-CCa--CGG--CUGGUGACGGcu -5'
19831 5' -60 NC_004687.1 + 44547 0.66 0.76361
Target:  5'- -gGGCCUGGGUGaacaucgucuugaCCGugcggucGCCGCgcugggGCCGGa -3'
miRNA:   3'- caCUGGACCCAC-------------GGC-------UGGUGa-----CGGCU- -5'
19831 5' -60 NC_004687.1 + 19845 0.66 0.756177
Target:  5'- -aGAUCgGGGUgGCC-ACCGC-GCCGAa -3'
miRNA:   3'- caCUGGaCCCA-CGGcUGGUGaCGGCU- -5'
19831 5' -60 NC_004687.1 + 90584 0.66 0.756177
Target:  5'- --cGCCUacGGGUGCCgGAUCAC-GCCGu -3'
miRNA:   3'- cacUGGA--CCCACGG-CUGGUGaCGGCu -5'
19831 5' -60 NC_004687.1 + 12116 0.66 0.756177
Target:  5'- gGUGGCCaGGc-GCCGACCggauggacgagGCUGCCa- -3'
miRNA:   3'- -CACUGGaCCcaCGGCUGG-----------UGACGGcu -5'
19831 5' -60 NC_004687.1 + 111872 0.66 0.756177
Target:  5'- gGUGGCCuacUGGG-GCCaucuGCCGCUGCaucaGAu -3'
miRNA:   3'- -CACUGG---ACCCaCGGc---UGGUGACGg---CU- -5'
19831 5' -60 NC_004687.1 + 2888 0.66 0.756177
Target:  5'- -aGACCUGGGUagugagcacGUCGGCUucgaUGUCGAc -3'
miRNA:   3'- caCUGGACCCA---------CGGCUGGug--ACGGCU- -5'
19831 5' -60 NC_004687.1 + 81818 0.66 0.756177
Target:  5'- cGUGGCgccacuCUGGGUcgGuCCGGaggCGCUGCCGAg -3'
miRNA:   3'- -CACUG------GACCCA--C-GGCUg--GUGACGGCU- -5'
19831 5' -60 NC_004687.1 + 20817 0.66 0.754308
Target:  5'- -aGAUCUGGGaUGCCGACgGCaagagcgaucugGCCa- -3'
miRNA:   3'- caCUGGACCC-ACGGCUGgUGa-----------CGGcu -5'
19831 5' -60 NC_004687.1 + 143727 0.66 0.746792
Target:  5'- --cGCCUGGGcgGCgaCGACCAacCUGCUGGu -3'
miRNA:   3'- cacUGGACCCa-CG--GCUGGU--GACGGCU- -5'
19831 5' -60 NC_004687.1 + 127461 0.66 0.746792
Target:  5'- cUGGCCUGGaaGCCGACCuccaucCUGuucaCCGAg -3'
miRNA:   3'- cACUGGACCcaCGGCUGGu-----GAC----GGCU- -5'
19831 5' -60 NC_004687.1 + 47677 0.66 0.746792
Target:  5'- -aGACCcgGcGGUGUCGGCCAgauagucGCCGAa -3'
miRNA:   3'- caCUGGa-C-CCACGGCUGGUga-----CGGCU- -5'
19831 5' -60 NC_004687.1 + 87578 0.66 0.737312
Target:  5'- -cGAgCUGa-UGCCGACCGC-GCCGGu -3'
miRNA:   3'- caCUgGACccACGGCUGGUGaCGGCU- -5'
19831 5' -60 NC_004687.1 + 20717 0.66 0.737312
Target:  5'- aUGGCCUuGGUGUa-GCC-CUGCCGGu -3'
miRNA:   3'- cACUGGAcCCACGgcUGGuGACGGCU- -5'
19831 5' -60 NC_004687.1 + 23534 0.66 0.727745
Target:  5'- -cGACCaccGuGGUccaGCCGACCACcaucGCCGAc -3'
miRNA:   3'- caCUGGa--C-CCA---CGGCUGGUGa---CGGCU- -5'
19831 5' -60 NC_004687.1 + 152771 0.66 0.727745
Target:  5'- -cGACC-GGGUGCCG-CUGCagGUCGGc -3'
miRNA:   3'- caCUGGaCCCACGGCuGGUGa-CGGCU- -5'
19831 5' -60 NC_004687.1 + 36906 0.66 0.727745
Target:  5'- -cGACCUGcgccuugaucaGGUGUCGuugGCCAcCUGCCGc -3'
miRNA:   3'- caCUGGAC-----------CCACGGC---UGGU-GACGGCu -5'
19831 5' -60 NC_004687.1 + 77499 0.66 0.718099
Target:  5'- -cGGCCcGGGaagGCCGAgCGCUGCa-- -3'
miRNA:   3'- caCUGGaCCCa--CGGCUgGUGACGgcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.