miRNA display CGI


Results 1 - 20 of 190 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19832 3' -59.3 NC_004687.1 + 571 0.66 0.818245
Target:  5'- gCAGAUCGCCCuggACgGGUugaucuaucugagcgAGG-UGGGCa -3'
miRNA:   3'- gGUCUGGCGGG---UGgCCG---------------UCCuACUCG- -5'
19832 3' -59.3 NC_004687.1 + 128852 0.66 0.814891
Target:  5'- cCCcGAUCGCUCGCCuGCGGGcccGGCu -3'
miRNA:   3'- -GGuCUGGCGGGUGGcCGUCCuacUCG- -5'
19832 3' -59.3 NC_004687.1 + 35380 0.66 0.814891
Target:  5'- gCAGGCCaGCCaCGCgCGGCGcauGAUGGcGCg -3'
miRNA:   3'- gGUCUGG-CGG-GUG-GCCGUc--CUACU-CG- -5'
19832 3' -59.3 NC_004687.1 + 62361 0.66 0.814891
Target:  5'- aCCAacuGCCGCUCAUgGGCgugguuGGGAugaaUGAGCc -3'
miRNA:   3'- -GGUc--UGGCGGGUGgCCG------UCCU----ACUCG- -5'
19832 3' -59.3 NC_004687.1 + 107564 0.66 0.814891
Target:  5'- -aAGAacUUGCCCugCGGCAuguGGAUGAagucgGCg -3'
miRNA:   3'- ggUCU--GGCGGGugGCCGU---CCUACU-----CG- -5'
19832 3' -59.3 NC_004687.1 + 116291 0.66 0.814891
Target:  5'- gCGGGCCGUCUGCCGaCGGGccGGuGCc -3'
miRNA:   3'- gGUCUGGCGGGUGGCcGUCCuaCU-CG- -5'
19832 3' -59.3 NC_004687.1 + 35212 0.66 0.814891
Target:  5'- gCCAGuCCGUCCucaGCUcgcggGGCuGGAUGuGGCa -3'
miRNA:   3'- -GGUCuGGCGGG---UGG-----CCGuCCUAC-UCG- -5'
19832 3' -59.3 NC_004687.1 + 81766 0.66 0.812359
Target:  5'- gCGGGgCGUCCGggugcggcUCGGCGGGGaugcuggugggcucUGAGCg -3'
miRNA:   3'- gGUCUgGCGGGU--------GGCCGUCCU--------------ACUCG- -5'
19832 3' -59.3 NC_004687.1 + 19684 0.66 0.806397
Target:  5'- aCCAGGCaGCCggauCACCuuGGcCAGGGUGucGGCa -3'
miRNA:   3'- -GGUCUGgCGG----GUGG--CC-GUCCUAC--UCG- -5'
19832 3' -59.3 NC_004687.1 + 33635 0.66 0.806397
Target:  5'- gUguGGgCGCCUAuCCGGCGGuGAUGcGUg -3'
miRNA:   3'- -GguCUgGCGGGU-GGCCGUC-CUACuCG- -5'
19832 3' -59.3 NC_004687.1 + 56320 0.66 0.806397
Target:  5'- uCCAGACCGUCCGgacCCGGaccuGcGccGGGCu -3'
miRNA:   3'- -GGUCUGGCGGGU---GGCCgu--C-CuaCUCG- -5'
19832 3' -59.3 NC_004687.1 + 1313 0.66 0.806397
Target:  5'- aCUGGACCGaCCACgGGUGGGucugaugaaaGGGCa -3'
miRNA:   3'- -GGUCUGGCgGGUGgCCGUCCua--------CUCG- -5'
19832 3' -59.3 NC_004687.1 + 111841 0.66 0.806397
Target:  5'- aCGcGACCGCCUggGCCuGGCGGGccaAGCc -3'
miRNA:   3'- gGU-CUGGCGGG--UGG-CCGUCCuacUCG- -5'
19832 3' -59.3 NC_004687.1 + 87891 0.66 0.806397
Target:  5'- gCCGcGCUGCCacuCACCGGUcucGGGAUGAc- -3'
miRNA:   3'- -GGUcUGGCGG---GUGGCCG---UCCUACUcg -5'
19832 3' -59.3 NC_004687.1 + 90257 0.66 0.806397
Target:  5'- cCCGGAUUGaUCCGagccuCCGGguGGAucagguUGAGCu -3'
miRNA:   3'- -GGUCUGGC-GGGU-----GGCCguCCU------ACUCG- -5'
19832 3' -59.3 NC_004687.1 + 115151 0.66 0.806397
Target:  5'- cCCAGACCGCCgagaACCaacaGCAGGgcGccgacAGCc -3'
miRNA:   3'- -GGUCUGGCGGg---UGGc---CGUCCuaC-----UCG- -5'
19832 3' -59.3 NC_004687.1 + 32812 0.66 0.797755
Target:  5'- -aGGGCgcuUGCCCucguCUGG-AGGGUGAGCa -3'
miRNA:   3'- ggUCUG---GCGGGu---GGCCgUCCUACUCG- -5'
19832 3' -59.3 NC_004687.1 + 80839 0.66 0.797755
Target:  5'- --uGAUCGUcucggCCACCGGCGGuGGUGcGGCc -3'
miRNA:   3'- gguCUGGCG-----GGUGGCCGUC-CUAC-UCG- -5'
19832 3' -59.3 NC_004687.1 + 91740 0.66 0.797755
Target:  5'- aCAGGCCcuGCaCCGCCuGGCgcucgccgGGGAacUGGGCc -3'
miRNA:   3'- gGUCUGG--CG-GGUGG-CCG--------UCCU--ACUCG- -5'
19832 3' -59.3 NC_004687.1 + 117319 0.66 0.797755
Target:  5'- gCCAGACCGCaggccuguuCCAggugaacaccCCGGCGGGcaccaAGCu -3'
miRNA:   3'- -GGUCUGGCG---------GGU----------GGCCGUCCuac--UCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.