miRNA display CGI


Results 1 - 20 of 190 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19832 3' -59.3 NC_004687.1 + 20581 0.66 0.788972
Target:  5'- uCCGG-CCaaGCCCAaCGGCGGGucgcugcgcGAGCg -3'
miRNA:   3'- -GGUCuGG--CGGGUgGCCGUCCua-------CUCG- -5'
19832 3' -59.3 NC_004687.1 + 117319 0.66 0.797755
Target:  5'- gCCAGACCGCaggccuguuCCAggugaacaccCCGGCGGGcaccaAGCu -3'
miRNA:   3'- -GGUCUGGCG---------GGU----------GGCCGUCCuac--UCG- -5'
19832 3' -59.3 NC_004687.1 + 118511 0.66 0.788972
Target:  5'- -aAGGCCcggaCCCACCGGCAGaaGAacGGCa -3'
miRNA:   3'- ggUCUGGc---GGGUGGCCGUC--CUacUCG- -5'
19832 3' -59.3 NC_004687.1 + 116327 0.66 0.771017
Target:  5'- -aGGGCCuGCCCgaggacgucuACCGGCAGcGGcugGAGUa -3'
miRNA:   3'- ggUCUGG-CGGG----------UGGCCGUC-CUa--CUCG- -5'
19832 3' -59.3 NC_004687.1 + 48166 0.66 0.788972
Target:  5'- cCCGGcCCGUCCgaugACCGGCAuc--GAGCa -3'
miRNA:   3'- -GGUCuGGCGGG----UGGCCGUccuaCUCG- -5'
19832 3' -59.3 NC_004687.1 + 44668 0.66 0.780057
Target:  5'- aCCA-ACgGCacuCCGGCAGGAUGgucGGCg -3'
miRNA:   3'- -GGUcUGgCGgguGGCCGUCCUAC---UCG- -5'
19832 3' -59.3 NC_004687.1 + 18213 0.66 0.788972
Target:  5'- aCCAGGCCaCCCACaccugGGUcaucgacgagaAGGAggccUGAGCc -3'
miRNA:   3'- -GGUCUGGcGGGUGg----CCG-----------UCCU----ACUCG- -5'
19832 3' -59.3 NC_004687.1 + 5769 0.66 0.788972
Target:  5'- gCGuGCUGCCCgACCGGCucgaAGGAgUGAGa -3'
miRNA:   3'- gGUcUGGCGGG-UGGCCG----UCCU-ACUCg -5'
19832 3' -59.3 NC_004687.1 + 101051 0.66 0.779158
Target:  5'- cCCGGGCCauGCCggaguugaucgagCGCCGGUAGaccUGGGCg -3'
miRNA:   3'- -GGUCUGG--CGG-------------GUGGCCGUCcu-ACUCG- -5'
19832 3' -59.3 NC_004687.1 + 69653 0.66 0.771017
Target:  5'- -uGGGCgaGCCCACCGGCGGc---AGCu -3'
miRNA:   3'- ggUCUGg-CGGGUGGCCGUCcuacUCG- -5'
19832 3' -59.3 NC_004687.1 + 33635 0.66 0.806397
Target:  5'- gUguGGgCGCCUAuCCGGCGGuGAUGcGUg -3'
miRNA:   3'- -GguCUgGCGGGU-GGCCGUC-CUACuCG- -5'
19832 3' -59.3 NC_004687.1 + 142602 0.66 0.780057
Target:  5'- cCCGGcgagauGCUGCCCACCcuGCAGaccGAGCg -3'
miRNA:   3'- -GGUC------UGGCGGGUGGc-CGUCcuaCUCG- -5'
19832 3' -59.3 NC_004687.1 + 1313 0.66 0.806397
Target:  5'- aCUGGACCGaCCACgGGUGGGucugaugaaaGGGCa -3'
miRNA:   3'- -GGUCUGGCgGGUGgCCGUCCua--------CUCG- -5'
19832 3' -59.3 NC_004687.1 + 119968 0.66 0.777357
Target:  5'- aCgAGAUCGUCCggcuggccauucugACCGGCGugaucaagcagcGGGUGAGUu -3'
miRNA:   3'- -GgUCUGGCGGG--------------UGGCCGU------------CCUACUCG- -5'
19832 3' -59.3 NC_004687.1 + 39778 0.66 0.771017
Target:  5'- gCCGGaACCGCaagcgcacCCGCaaaGGcCAGGAgGAGCc -3'
miRNA:   3'- -GGUC-UGGCG--------GGUGg--CC-GUCCUaCUCG- -5'
19832 3' -59.3 NC_004687.1 + 85054 0.66 0.771017
Target:  5'- cCCGGGCaCGUggUCACCGGCuGGGgcuGCu -3'
miRNA:   3'- -GGUCUG-GCG--GGUGGCCGuCCUacuCG- -5'
19832 3' -59.3 NC_004687.1 + 141502 0.66 0.774647
Target:  5'- aCCGGGCCaacucgacaaccaCCAUCGGCAccGGGUGGGa -3'
miRNA:   3'- -GGUCUGGcg-----------GGUGGCCGU--CCUACUCg -5'
19832 3' -59.3 NC_004687.1 + 80839 0.66 0.797755
Target:  5'- --uGAUCGUcucggCCACCGGCGGuGGUGcGGCc -3'
miRNA:   3'- gguCUGGCG-----GGUGGCCGUC-CUAC-UCG- -5'
19832 3' -59.3 NC_004687.1 + 56320 0.66 0.806397
Target:  5'- uCCAGACCGUCCGgacCCGGaccuGcGccGGGCu -3'
miRNA:   3'- -GGUCUGGCGGGU---GGCCgu--C-CuaCUCG- -5'
19832 3' -59.3 NC_004687.1 + 32812 0.66 0.797755
Target:  5'- -aGGGCgcuUGCCCucguCUGG-AGGGUGAGCa -3'
miRNA:   3'- ggUCUG---GCGGGu---GGCCgUCCUACUCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.