miRNA display CGI


Results 1 - 20 of 189 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19832 5' -58.1 NC_004687.1 + 123769 0.66 0.827909
Target:  5'- -cGCUUgggUCGGGUgccgaCGGCGACCAccGGCa -3'
miRNA:   3'- aaCGGGa--AGUCUA-----GCCGCUGGU--CCGg -5'
19832 5' -58.1 NC_004687.1 + 107953 0.66 0.827909
Target:  5'- -cGCCac-CGGcuUCGGuCGGCUGGGCCg -3'
miRNA:   3'- aaCGGgaaGUCu-AGCC-GCUGGUCCGG- -5'
19832 5' -58.1 NC_004687.1 + 118207 0.66 0.827909
Target:  5'- gUUGCCCUgcuug-CGGUagcuGGCCAGGCg -3'
miRNA:   3'- -AACGGGAagucuaGCCG----CUGGUCCGg -5'
19832 5' -58.1 NC_004687.1 + 29993 0.66 0.827909
Target:  5'- -gGCCUUggGGAUgcccaGGUgcuuGGCCAGGCCg -3'
miRNA:   3'- aaCGGGAagUCUAg----CCG----CUGGUCCGG- -5'
19832 5' -58.1 NC_004687.1 + 49456 0.66 0.827909
Target:  5'- -gGCCCgcaGGAUCGGCauggugaaccGGCgGuGGCCg -3'
miRNA:   3'- aaCGGGaagUCUAGCCG----------CUGgU-CCGG- -5'
19832 5' -58.1 NC_004687.1 + 42651 0.66 0.822852
Target:  5'- cUGCCCUacgacccgucuccgCAGuAUcCGGCGcuGCCGGGCg -3'
miRNA:   3'- aACGGGAa-------------GUC-UA-GCCGC--UGGUCCGg -5'
19832 5' -58.1 NC_004687.1 + 52698 0.66 0.819445
Target:  5'- -aGCCCgcaccUCGGAUCacuGCGACCu-GCCu -3'
miRNA:   3'- aaCGGGa----AGUCUAGc--CGCUGGucCGG- -5'
19832 5' -58.1 NC_004687.1 + 154840 0.66 0.819445
Target:  5'- aUGCUUcaUCAGcUCGGCGcccuggaugGCCAGGCg -3'
miRNA:   3'- aACGGGa-AGUCuAGCCGC---------UGGUCCGg -5'
19832 5' -58.1 NC_004687.1 + 134301 0.66 0.819445
Target:  5'- -aGCCCgacCAGGaUGGCGugCGGcGUCg -3'
miRNA:   3'- aaCGGGaa-GUCUaGCCGCugGUC-CGG- -5'
19832 5' -58.1 NC_004687.1 + 14980 0.66 0.819445
Target:  5'- -gGCCaggUCGGGgucuUCGGCGAC--GGCCu -3'
miRNA:   3'- aaCGGga-AGUCU----AGCCGCUGguCCGG- -5'
19832 5' -58.1 NC_004687.1 + 131820 0.66 0.819445
Target:  5'- -gGCCC--CAGAUCaGCcgGACCAGGUUc -3'
miRNA:   3'- aaCGGGaaGUCUAGcCG--CUGGUCCGG- -5'
19832 5' -58.1 NC_004687.1 + 6208 0.66 0.819445
Target:  5'- gUGCgCgacCAGAUCGGC--CCGGGCa -3'
miRNA:   3'- aACGgGaa-GUCUAGCCGcuGGUCCGg -5'
19832 5' -58.1 NC_004687.1 + 39536 0.66 0.819445
Target:  5'- -gGCCC--CGGcgCcuGGCGucGCCGGGCCg -3'
miRNA:   3'- aaCGGGaaGUCuaG--CCGC--UGGUCCGG- -5'
19832 5' -58.1 NC_004687.1 + 139544 0.66 0.819445
Target:  5'- -cGCCCgUUGGucUCGGUGcGCCAGGUa -3'
miRNA:   3'- aaCGGGaAGUCu-AGCCGC-UGGUCCGg -5'
19832 5' -58.1 NC_004687.1 + 123942 0.66 0.819445
Target:  5'- aUGUCCggCAGGaggucgcggucaUCcGCGACCAGGUg -3'
miRNA:   3'- aACGGGaaGUCU------------AGcCGCUGGUCCGg -5'
19832 5' -58.1 NC_004687.1 + 154774 0.66 0.816873
Target:  5'- cUGCCCauugcgcacguugagCAGGaacuccCGGCGAUCGGGCUc -3'
miRNA:   3'- aACGGGaa-------------GUCUa-----GCCGCUGGUCCGG- -5'
19832 5' -58.1 NC_004687.1 + 124671 0.66 0.814286
Target:  5'- gUUGCCCUcggUCAGcacgccgugggugucGUCGGCGuugaucACCAgcGGCUg -3'
miRNA:   3'- -AACGGGA---AGUC---------------UAGCCGC------UGGU--CCGG- -5'
19832 5' -58.1 NC_004687.1 + 67573 0.66 0.810813
Target:  5'- -cGCCCgagCAGAUguaCGacGCGACCuGGCa -3'
miRNA:   3'- aaCGGGaa-GUCUA---GC--CGCUGGuCCGg -5'
19832 5' -58.1 NC_004687.1 + 15130 0.66 0.810813
Target:  5'- --cCCCgau-GAUCGGCGACUucgAGGUCg -3'
miRNA:   3'- aacGGGaaguCUAGCCGCUGG---UCCGG- -5'
19832 5' -58.1 NC_004687.1 + 78101 0.66 0.810813
Target:  5'- -aGCCCgccuggcagUCgcaccaggAGAUCGGCaagaacugGACCgAGGCCg -3'
miRNA:   3'- aaCGGGa--------AG--------UCUAGCCG--------CUGG-UCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.