miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19834 3' -53.1 NC_004687.1 + 106555 0.66 0.983103
Target:  5'- uGGUCGAgaUGaAGGCCUCuuccugcucacccuGGucguuacggcucuGGUCGCCc -3'
miRNA:   3'- -CCAGCU--ACaUCCGGAG--------------UCu------------CUAGCGG- -5'
19834 3' -53.1 NC_004687.1 + 150315 0.66 0.982516
Target:  5'- uGUCGGUGaaccGGGCC-CAcacguggucGAcGGUCGCCg -3'
miRNA:   3'- cCAGCUACa---UCCGGaGU---------CU-CUAGCGG- -5'
19834 3' -53.1 NC_004687.1 + 137222 0.66 0.982516
Target:  5'- cGUCGAggacuUGUAGGaCCggCGcGGGGUgGCCu -3'
miRNA:   3'- cCAGCU-----ACAUCC-GGa-GU-CUCUAgCGG- -5'
19834 3' -53.1 NC_004687.1 + 129662 0.66 0.980446
Target:  5'- uGGcCGAuccggggguUGUAGGCC-CGGuGAUagaUGCCg -3'
miRNA:   3'- -CCaGCU---------ACAUCCGGaGUCuCUA---GCGG- -5'
19834 3' -53.1 NC_004687.1 + 88313 0.66 0.978199
Target:  5'- gGGUCGGc--GGGuCCUCGGGGucccaGCCg -3'
miRNA:   3'- -CCAGCUacaUCC-GGAGUCUCuag--CGG- -5'
19834 3' -53.1 NC_004687.1 + 120275 0.66 0.978199
Target:  5'- cGGUCGuUGUAGGUgU-GGAaGUCGUCg -3'
miRNA:   3'- -CCAGCuACAUCCGgAgUCUcUAGCGG- -5'
19834 3' -53.1 NC_004687.1 + 116441 0.66 0.978199
Target:  5'- cGGgCGggGgcGGGCCaccggCAGcaGGAUCGCCg -3'
miRNA:   3'- -CCaGCuaCa-UCCGGa----GUC--UCUAGCGG- -5'
19834 3' -53.1 NC_004687.1 + 77715 0.66 0.978199
Target:  5'- uGGcCGAcaUGGGCCU--GGGGUCGCUg -3'
miRNA:   3'- -CCaGCUacAUCCGGAguCUCUAGCGG- -5'
19834 3' -53.1 NC_004687.1 + 66038 0.66 0.975766
Target:  5'- uGGcUCGAUGUcGGCC-CAcauGcuGUCGCCg -3'
miRNA:   3'- -CC-AGCUACAuCCGGaGU---CucUAGCGG- -5'
19834 3' -53.1 NC_004687.1 + 88418 0.66 0.975766
Target:  5'- cGGUCGGcacccgGUAGGU----GGGGUCGCCc -3'
miRNA:   3'- -CCAGCUa-----CAUCCGgaguCUCUAGCGG- -5'
19834 3' -53.1 NC_004687.1 + 30063 0.66 0.974215
Target:  5'- uGGUCGGUGauGGugagcuggcgcgacuCCUCGucgaccuuGAGGUCGCCc -3'
miRNA:   3'- -CCAGCUACauCC---------------GGAGU--------CUCUAGCGG- -5'
19834 3' -53.1 NC_004687.1 + 153998 0.66 0.973141
Target:  5'- cGUCGAUGcccAGGCCaaGGuGGUcaCGCCg -3'
miRNA:   3'- cCAGCUACa--UCCGGagUCuCUA--GCGG- -5'
19834 3' -53.1 NC_004687.1 + 49607 0.66 0.973141
Target:  5'- cGGUCGAaGUAcucggcaGCCUCGGuGGUCGagaCCa -3'
miRNA:   3'- -CCAGCUaCAUc------CGGAGUCuCUAGC---GG- -5'
19834 3' -53.1 NC_004687.1 + 97285 0.67 0.970316
Target:  5'- cGGUCug-GUAcuGGCCguggUCAG-GGUCGCCc -3'
miRNA:   3'- -CCAGcuaCAU--CCGG----AGUCuCUAGCGG- -5'
19834 3' -53.1 NC_004687.1 + 49112 0.67 0.970316
Target:  5'- cGG-CGAUGUAGGUCUugcCAGAGccguggGUC-CCg -3'
miRNA:   3'- -CCaGCUACAUCCGGA---GUCUC------UAGcGG- -5'
19834 3' -53.1 NC_004687.1 + 131973 0.67 0.970316
Target:  5'- aGGUCGGgcgGUacAGGCCcgAGGGGUUGUa -3'
miRNA:   3'- -CCAGCUa--CA--UCCGGagUCUCUAGCGg -5'
19834 3' -53.1 NC_004687.1 + 89881 0.67 0.969429
Target:  5'- cGUUGAucaccagcucgcccUGUGGGUCggCAGAG-UUGCCg -3'
miRNA:   3'- cCAGCU--------------ACAUCCGGa-GUCUCuAGCGG- -5'
19834 3' -53.1 NC_004687.1 + 56409 0.67 0.967285
Target:  5'- cGUCGGUgcggGUGGGCUUCgucgaGGAaugGAUCGCUc -3'
miRNA:   3'- cCAGCUA----CAUCCGGAG-----UCU---CUAGCGG- -5'
19834 3' -53.1 NC_004687.1 + 145315 0.67 0.967285
Target:  5'- --cCGAUGaAGuaCUCAcccgccGAGAUCGCCa -3'
miRNA:   3'- ccaGCUACaUCcgGAGU------CUCUAGCGG- -5'
19834 3' -53.1 NC_004687.1 + 134228 0.67 0.967285
Target:  5'- -aUCGAgcUGcucauGGCCUCcGAGGUCGaCCa -3'
miRNA:   3'- ccAGCU--ACau---CCGGAGuCUCUAGC-GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.