miRNA display CGI


Results 1 - 20 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19834 5' -53 NC_004687.1 + 90656 0.66 0.98496
Target:  5'- cUCGGCGuucuUCUUG-GccCCGGuGUGCUg -3'
miRNA:   3'- -AGCUGCu---AGAACgCaaGGCCuCACGG- -5'
19834 5' -53 NC_004687.1 + 109758 0.66 0.98496
Target:  5'- aCGGCGAguagUGCcgUCCGGcGUGCg -3'
miRNA:   3'- aGCUGCUaga-ACGcaAGGCCuCACGg -5'
19834 5' -53 NC_004687.1 + 121653 0.66 0.98496
Target:  5'- cUGGCGcgCUU-CGUgcacugccgacaUCCGG-GUGCCa -3'
miRNA:   3'- aGCUGCuaGAAcGCA------------AGGCCuCACGG- -5'
19834 5' -53 NC_004687.1 + 138981 0.66 0.98496
Target:  5'- cUCGGCGG-CggcaGCGgaggcCCGG-GUGCCg -3'
miRNA:   3'- -AGCUGCUaGaa--CGCaa---GGCCuCACGG- -5'
19834 5' -53 NC_004687.1 + 121035 0.66 0.98496
Target:  5'- cUCGGCGAUgagcUGC--UCCaGGGUGCCc -3'
miRNA:   3'- -AGCUGCUAga--ACGcaAGGcCUCACGG- -5'
19834 5' -53 NC_004687.1 + 15636 0.66 0.98496
Target:  5'- -gGACGAUCgaGCcgaCCGGGGUgagcacGCCg -3'
miRNA:   3'- agCUGCUAGaaCGcaaGGCCUCA------CGG- -5'
19834 5' -53 NC_004687.1 + 29349 0.66 0.983112
Target:  5'- gUCGAgGAUCUUGUugaggacccGggCCGGGaucuuGUGCUc -3'
miRNA:   3'- -AGCUgCUAGAACG---------CaaGGCCU-----CACGG- -5'
19834 5' -53 NC_004687.1 + 145281 0.66 0.983112
Target:  5'- gCGGCGAUCUcgGCGUuggccugagaUUCGGcGcugGCCg -3'
miRNA:   3'- aGCUGCUAGAa-CGCA----------AGGCCuCa--CGG- -5'
19834 5' -53 NC_004687.1 + 114862 0.66 0.983112
Target:  5'- gUGGCGuUCaUGUGcUCgaaCGGGGUGCCg -3'
miRNA:   3'- aGCUGCuAGaACGCaAG---GCCUCACGG- -5'
19834 5' -53 NC_004687.1 + 88700 0.66 0.983112
Target:  5'- cUCGACGccgGUCggGCGguggUCgGGGGUccaGCCc -3'
miRNA:   3'- -AGCUGC---UAGaaCGCa---AGgCCUCA---CGG- -5'
19834 5' -53 NC_004687.1 + 46986 0.66 0.983112
Target:  5'- gUCGACG-UCUUcggcaggcaucaGCcg-CCGGGGUGCg -3'
miRNA:   3'- -AGCUGCuAGAA------------CGcaaGGCCUCACGg -5'
19834 5' -53 NC_004687.1 + 102189 0.66 0.981098
Target:  5'- -gGACGAUCggccacGCucagCCGGAGgGCCu -3'
miRNA:   3'- agCUGCUAGaa----CGcaa-GGCCUCaCGG- -5'
19834 5' -53 NC_004687.1 + 42669 0.66 0.981098
Target:  5'- aCGGCGGUCUgcaccaGCGcUUCgGuGAGcGCCu -3'
miRNA:   3'- aGCUGCUAGAa-----CGC-AAGgC-CUCaCGG- -5'
19834 5' -53 NC_004687.1 + 50964 0.66 0.981098
Target:  5'- gCGAUGAUCUUcGCagGUUCgcucaCGG-GUGCCc -3'
miRNA:   3'- aGCUGCUAGAA-CG--CAAG-----GCCuCACGG- -5'
19834 5' -53 NC_004687.1 + 81763 0.66 0.981098
Target:  5'- aCGGCGGg---GCG-UCCGG-GUGCg -3'
miRNA:   3'- aGCUGCUagaaCGCaAGGCCuCACGg -5'
19834 5' -53 NC_004687.1 + 74347 0.66 0.97868
Target:  5'- uUCGGCGGUCggcUGgGcaCCGuggccaaGGGUGCCg -3'
miRNA:   3'- -AGCUGCUAGa--ACgCaaGGC-------CUCACGG- -5'
19834 5' -53 NC_004687.1 + 6075 0.66 0.977509
Target:  5'- aCGGCGAUCUggcgggcccgacggGCGUacucgggCCaGGAG-GCCu -3'
miRNA:   3'- aGCUGCUAGAa-------------CGCAa------GG-CCUCaCGG- -5'
19834 5' -53 NC_004687.1 + 150962 0.66 0.977509
Target:  5'- cCGAgGAUCUgcguccggaacccccUGCGccaCCGGAGUcGUCg -3'
miRNA:   3'- aGCUgCUAGA---------------ACGCaa-GGCCUCA-CGG- -5'
19834 5' -53 NC_004687.1 + 107037 0.66 0.97579
Target:  5'- -gGACGGgcucCUgguucaucacgcugUGCGgUCCGGGGUcGCCg -3'
miRNA:   3'- agCUGCUa---GA--------------ACGCaAGGCCUCA-CGG- -5'
19834 5' -53 NC_004687.1 + 105021 0.66 0.973977
Target:  5'- cUCGGCGA---UGaCGUucUCCGGGGUcacGCCc -3'
miRNA:   3'- -AGCUGCUagaAC-GCA--AGGCCUCA---CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.