miRNA display CGI


Results 1 - 20 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19834 5' -53 NC_004687.1 + 73149 1.12 0.004274
Target:  5'- gUCGACGAUCUUGCGUUCCGGAGUGCCc -3'
miRNA:   3'- -AGCUGCUAGAACGCAAGGCCUCACGG- -5'
19834 5' -53 NC_004687.1 + 145570 0.8 0.401919
Target:  5'- aUCGACGAg---GCGcagaaggCCGGAGUGCCg -3'
miRNA:   3'- -AGCUGCUagaaCGCaa-----GGCCUCACGG- -5'
19834 5' -53 NC_004687.1 + 8001 0.8 0.410585
Target:  5'- gCGGCGcUCUUGCacccgcucgUCCGGGGUGCCc -3'
miRNA:   3'- aGCUGCuAGAACGca-------AGGCCUCACGG- -5'
19834 5' -53 NC_004687.1 + 101559 0.78 0.493441
Target:  5'- uUCGGCGGUCccggcgGCGUagCCGGucAGUGCCa -3'
miRNA:   3'- -AGCUGCUAGaa----CGCAa-GGCC--UCACGG- -5'
19834 5' -53 NC_004687.1 + 24789 0.77 0.512899
Target:  5'- gUCGGUGAUCUUGCGaUCCGGcguccaGGUGCUc -3'
miRNA:   3'- -AGCUGCUAGAACGCaAGGCC------UCACGG- -5'
19834 5' -53 NC_004687.1 + 120990 0.76 0.562801
Target:  5'- -aGGCGAccCUUGCGg--CGGAGUGCCg -3'
miRNA:   3'- agCUGCUa-GAACGCaagGCCUCACGG- -5'
19834 5' -53 NC_004687.1 + 12459 0.75 0.624204
Target:  5'- -gGGCGAUCUUgagcgGCGUgacaCCGGuGGUGCCa -3'
miRNA:   3'- agCUGCUAGAA-----CGCAa---GGCC-UCACGG- -5'
19834 5' -53 NC_004687.1 + 28401 0.75 0.655089
Target:  5'- gUCG-CGAUCUcGUGcgCCGGAG-GCCg -3'
miRNA:   3'- -AGCuGCUAGAaCGCaaGGCCUCaCGG- -5'
19834 5' -53 NC_004687.1 + 110560 0.75 0.665357
Target:  5'- uUCGGCGAgCUgagcGCGguguugcuggCCGGGGUGCCc -3'
miRNA:   3'- -AGCUGCUaGAa---CGCaa--------GGCCUCACGG- -5'
19834 5' -53 NC_004687.1 + 24601 0.73 0.755466
Target:  5'- cCGACGAUCUcgGUG-UCCGGcucGGUGgCCg -3'
miRNA:   3'- aGCUGCUAGAa-CGCaAGGCC---UCAC-GG- -5'
19834 5' -53 NC_004687.1 + 119193 0.73 0.765052
Target:  5'- cCGGCGGUCUUGC---CCGGGGccugcggGCCa -3'
miRNA:   3'- aGCUGCUAGAACGcaaGGCCUCa------CGG- -5'
19834 5' -53 NC_004687.1 + 88604 0.72 0.802108
Target:  5'- gUCGGCGGUCUggccgaGCGggugcagCUGGucGGUGCCg -3'
miRNA:   3'- -AGCUGCUAGAa-----CGCaa-----GGCC--UCACGG- -5'
19834 5' -53 NC_004687.1 + 81584 0.72 0.819737
Target:  5'- cUCGGUGGUCgugGCGgcaCCGGcGGUGCCg -3'
miRNA:   3'- -AGCUGCUAGaa-CGCaa-GGCC-UCACGG- -5'
19834 5' -53 NC_004687.1 + 17897 0.72 0.819737
Target:  5'- cUCGGUGGUgUcgGCGUUCUGGAGcugGCCg -3'
miRNA:   3'- -AGCUGCUAgAa-CGCAAGGCCUCa--CGG- -5'
19834 5' -53 NC_004687.1 + 39680 0.71 0.844866
Target:  5'- cUCGGCG-UCggugGCGUgcagCCGGGGcaugGCCa -3'
miRNA:   3'- -AGCUGCuAGaa--CGCAa---GGCCUCa---CGG- -5'
19834 5' -53 NC_004687.1 + 19387 0.71 0.852861
Target:  5'- cCGACGGagUCUucUGgGUUCCGGuucaUGCCg -3'
miRNA:   3'- aGCUGCU--AGA--ACgCAAGGCCuc--ACGG- -5'
19834 5' -53 NC_004687.1 + 47127 0.7 0.875605
Target:  5'- aUCGGUGAUCUUGCG-UCCGGucucGGUGaUCu -3'
miRNA:   3'- -AGCUGCUAGAACGCaAGGCC----UCAC-GG- -5'
19834 5' -53 NC_004687.1 + 72783 0.7 0.882753
Target:  5'- -aGACGAUCgaguccgGCGggacguugCCGGuGGUGCCc -3'
miRNA:   3'- agCUGCUAGaa-----CGCaa------GGCC-UCACGG- -5'
19834 5' -53 NC_004687.1 + 144069 0.7 0.88555
Target:  5'- gUGGCGAagccguugcgggucuUCUUGacCGgcgcaUCCGGGGUGCCu -3'
miRNA:   3'- aGCUGCU---------------AGAAC--GCa----AGGCCUCACGG- -5'
19834 5' -53 NC_004687.1 + 110628 0.7 0.889676
Target:  5'- gUCGACGAgacccucggagUCcgGCGUgguggacggagCCGGAGUGgCCg -3'
miRNA:   3'- -AGCUGCU-----------AGaaCGCAa----------GGCCUCAC-GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.