miRNA display CGI


Results 1 - 20 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19845 3' -58.2 NC_004687.1 + 71014 0.66 0.85877
Target:  5'- gUCUGGG-CCCGGGgucucgacgaccuccGGcUCgACCGCCGg -3'
miRNA:   3'- -GGACUCaGGGCCU---------------UC-AGgUGGCGGUg -5'
19845 3' -58.2 NC_004687.1 + 80675 0.66 0.85575
Target:  5'- aCCUG-GUCuCCGGcaGGGUCCcaccggaacaGCUGCCGa -3'
miRNA:   3'- -GGACuCAG-GGCC--UUCAGG----------UGGCGGUg -5'
19845 3' -58.2 NC_004687.1 + 48787 0.66 0.85575
Target:  5'- gCUGcAGacCCCGGAucuGUCCGagGCCGCa -3'
miRNA:   3'- gGAC-UCa-GGGCCUu--CAGGUggCGGUG- -5'
19845 3' -58.2 NC_004687.1 + 15057 0.66 0.85575
Target:  5'- aCCgaGGUCUCGc-AGUCCcugaACCGCCACa -3'
miRNA:   3'- -GGacUCAGGGCcuUCAGG----UGGCGGUG- -5'
19845 3' -58.2 NC_004687.1 + 134949 0.66 0.85575
Target:  5'- --gGAGUgCUGGcGGUCUACUGCCu- -3'
miRNA:   3'- ggaCUCAgGGCCuUCAGGUGGCGGug -5'
19845 3' -58.2 NC_004687.1 + 136300 0.66 0.85575
Target:  5'- aCCUuccGG-CCCaGGAcGUCCAggcCCGCCGCg -3'
miRNA:   3'- -GGAc--UCaGGG-CCUuCAGGU---GGCGGUG- -5'
19845 3' -58.2 NC_004687.1 + 90682 0.66 0.85575
Target:  5'- gCUGAGggaCCGGAccguuGUgCGCUGCUGCg -3'
miRNA:   3'- gGACUCag-GGCCUu----CAgGUGGCGGUG- -5'
19845 3' -58.2 NC_004687.1 + 111488 0.66 0.85575
Target:  5'- gCCcGGGUCUCGGGAGa--ACUGCCGa -3'
miRNA:   3'- -GGaCUCAGGGCCUUCaggUGGCGGUg -5'
19845 3' -58.2 NC_004687.1 + 105628 0.66 0.851164
Target:  5'- aCCUGAugaucgagGUCCUGGAGGUCaagcgcauuCaggagauggccaagaGCCGCUACg -3'
miRNA:   3'- -GGACU--------CAGGGCCUUCAG---------G---------------UGGCGGUG- -5'
19845 3' -58.2 NC_004687.1 + 52818 0.66 0.848068
Target:  5'- ---aGGUCCgGGAcaAGUUCAUCGCCGa -3'
miRNA:   3'- ggacUCAGGgCCU--UCAGGUGGCGGUg -5'
19845 3' -58.2 NC_004687.1 + 14699 0.66 0.848068
Target:  5'- cCCaGGGUCCgCGc--GUCCACCGCUg- -3'
miRNA:   3'- -GGaCUCAGG-GCcuuCAGGUGGCGGug -5'
19845 3' -58.2 NC_004687.1 + 151728 0.66 0.848068
Target:  5'- uCCUGca-CUCGGAGGggCGCCGCCGg -3'
miRNA:   3'- -GGACucaGGGCCUUCagGUGGCGGUg -5'
19845 3' -58.2 NC_004687.1 + 126095 0.66 0.848068
Target:  5'- gCUGA--CCCGGGuGGUcgacaCCAUCGCCACc -3'
miRNA:   3'- gGACUcaGGGCCU-UCA-----GGUGGCGGUG- -5'
19845 3' -58.2 NC_004687.1 + 101565 0.66 0.848068
Target:  5'- gCCUGGGacUCCCGGgcGgucuggCCGgUGCCGu -3'
miRNA:   3'- -GGACUC--AGGGCCuuCa-----GGUgGCGGUg -5'
19845 3' -58.2 NC_004687.1 + 78601 0.66 0.848068
Target:  5'- gCCgGGGcgCCCGGAg--CCACCGCgAUu -3'
miRNA:   3'- -GGaCUCa-GGGCCUucaGGUGGCGgUG- -5'
19845 3' -58.2 NC_004687.1 + 77451 0.66 0.848068
Target:  5'- --cGcAGUgCCCGGAccAGcucgaCCGCCGCCGCc -3'
miRNA:   3'- ggaC-UCA-GGGCCU--UCa----GGUGGCGGUG- -5'
19845 3' -58.2 NC_004687.1 + 16463 0.66 0.848068
Target:  5'- aCCUGGGUcgCCCGGGugaccGUCCcCCagacCCGCa -3'
miRNA:   3'- -GGACUCA--GGGCCUu----CAGGuGGc---GGUG- -5'
19845 3' -58.2 NC_004687.1 + 129891 0.66 0.8402
Target:  5'- aCCguAGUCCCGGGacuccuccucAGUgaCCACCaCCACg -3'
miRNA:   3'- -GGacUCAGGGCCU----------UCA--GGUGGcGGUG- -5'
19845 3' -58.2 NC_004687.1 + 117438 0.66 0.8402
Target:  5'- aCCcGGGUgCCCGGccugcucgacAAGUacaucgagCGCCGCCACg -3'
miRNA:   3'- -GGaCUCA-GGGCC----------UUCAg-------GUGGCGGUG- -5'
19845 3' -58.2 NC_004687.1 + 81828 0.66 0.8402
Target:  5'- cUCUGGGUCgguCCGGAGGcgCUGCCgaGUCGCg -3'
miRNA:   3'- -GGACUCAG---GGCCUUCa-GGUGG--CGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.