miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19846 3' -58.5 NC_004687.1 + 39311 0.66 0.782808
Target:  5'- -gCUGGgcGAGGCCcaGGCGGuCGCGGg -3'
miRNA:   3'- uaGGCCuuCUCCGGc-UCGCC-GUGUUu -5'
19846 3' -58.5 NC_004687.1 + 143436 0.66 0.782808
Target:  5'- -aCUGGGAGAGGUCG-GCGauCACGAGg -3'
miRNA:   3'- uaGGCCUUCUCCGGCuCGCc-GUGUUU- -5'
19846 3' -58.5 NC_004687.1 + 29067 0.66 0.782808
Target:  5'- aAUCCGGGcucAGcGCCucguGGCGGCACGAAc -3'
miRNA:   3'- -UAGGCCUuc-UC-CGGc---UCGCCGUGUUU- -5'
19846 3' -58.5 NC_004687.1 + 110665 0.66 0.782808
Target:  5'- -gCCGG-AGuGGCCGAGCugcccgacGGCGCc-- -3'
miRNA:   3'- uaGGCCuUCuCCGGCUCG--------CCGUGuuu -5'
19846 3' -58.5 NC_004687.1 + 26791 0.66 0.773489
Target:  5'- cGUCCGaugccGAGcAGGCCGAGCGcGC-CGGAc -3'
miRNA:   3'- -UAGGCc----UUC-UCCGGCUCGC-CGuGUUU- -5'
19846 3' -58.5 NC_004687.1 + 101952 0.66 0.773489
Target:  5'- -aCCGGAGGccAGGCCGGagaauCGGCGCc-- -3'
miRNA:   3'- uaGGCCUUC--UCCGGCUc----GCCGUGuuu -5'
19846 3' -58.5 NC_004687.1 + 97238 0.66 0.764043
Target:  5'- gAUCCGGGguAGAGGCucaaCGAGCuGCugAu- -3'
miRNA:   3'- -UAGGCCU--UCUCCG----GCUCGcCGugUuu -5'
19846 3' -58.5 NC_004687.1 + 146966 0.66 0.754479
Target:  5'- cAUCgGGGAGuGGGCCGA-CGGCuuCAAGa -3'
miRNA:   3'- -UAGgCCUUC-UCCGGCUcGCCGu-GUUU- -5'
19846 3' -58.5 NC_004687.1 + 90764 0.67 0.732086
Target:  5'- aGUCUGGGAGAaGCCGGGCacguaguucuggccGcGCACGAAc -3'
miRNA:   3'- -UAGGCCUUCUcCGGCUCG--------------C-CGUGUUU- -5'
19846 3' -58.5 NC_004687.1 + 13833 0.67 0.725174
Target:  5'- -aCCGcGAucauGGAGaucaccuucgccGCCGAGUGGCGCAAGc -3'
miRNA:   3'- uaGGC-CU----UCUC------------CGGCUCGCCGUGUUU- -5'
19846 3' -58.5 NC_004687.1 + 78898 0.67 0.715232
Target:  5'- aGUCCGGAcccuGGuAGGCCGGgaucuGCGGCcccCAGAu -3'
miRNA:   3'- -UAGGCCU----UC-UCCGGCU-----CGCCGu--GUUU- -5'
19846 3' -58.5 NC_004687.1 + 105155 0.67 0.715232
Target:  5'- -cCUGGAGaAGGUcaaCGAGCGGCugGAGa -3'
miRNA:   3'- uaGGCCUUcUCCG---GCUCGCCGugUUU- -5'
19846 3' -58.5 NC_004687.1 + 26687 0.67 0.715232
Target:  5'- -gCUGGAcGAGGCCaccGGCGGCuACGAc -3'
miRNA:   3'- uaGGCCUuCUCCGGc--UCGCCG-UGUUu -5'
19846 3' -58.5 NC_004687.1 + 147349 0.67 0.695144
Target:  5'- gGUCCGGcGGcGGCgGaAGCGGCAgAGGu -3'
miRNA:   3'- -UAGGCCuUCuCCGgC-UCGCCGUgUUU- -5'
19846 3' -58.5 NC_004687.1 + 27830 0.67 0.695144
Target:  5'- cUCUGccGGAGGCgGGGuCGGCGCGAc -3'
miRNA:   3'- uAGGCcuUCUCCGgCUC-GCCGUGUUu -5'
19846 3' -58.5 NC_004687.1 + 44678 0.67 0.695144
Target:  5'- cUCCGGcAGGAuGGUCG-GCGGCugAc- -3'
miRNA:   3'- uAGGCC-UUCU-CCGGCuCGCCGugUuu -5'
19846 3' -58.5 NC_004687.1 + 118969 0.67 0.685016
Target:  5'- cGUCCuuGAGcuuGGCCGAGCGGCcaccgGCGAAg -3'
miRNA:   3'- -UAGGccUUCu--CCGGCUCGCCG-----UGUUU- -5'
19846 3' -58.5 NC_004687.1 + 29369 0.67 0.685016
Target:  5'- -cCCGGGccgGGAucuugugcuccuGGCCGAGCuGGCGCGc- -3'
miRNA:   3'- uaGGCCU---UCU------------CCGGCUCG-CCGUGUuu -5'
19846 3' -58.5 NC_004687.1 + 95819 0.68 0.673824
Target:  5'- cUCCGGGAgggcgcucguuuuGAGGCCGcuucGGCGGCGu--- -3'
miRNA:   3'- uAGGCCUU-------------CUCCGGC----UCGCCGUguuu -5'
19846 3' -58.5 NC_004687.1 + 27505 0.68 0.654403
Target:  5'- -gCCGGAAG-GGCCuuGGCGGCAgGc- -3'
miRNA:   3'- uaGGCCUUCuCCGGc-UCGCCGUgUuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.