miRNA display CGI


Results 1 - 20 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19846 5' -67.7 NC_004687.1 + 150590 0.66 0.396663
Target:  5'- cGUUgGUCUUCUUGGCCUCGGCCaGCAg -3'
miRNA:   3'- aCGGgCGGAGGGGUCGGGGUCGG-CGU- -5'
19846 5' -67.7 NC_004687.1 + 43074 0.66 0.396663
Target:  5'- -aCCCGgaCCUgCCCGGCCacauggCCAGCuCGCAc -3'
miRNA:   3'- acGGGC--GGAgGGGUCGG------GGUCG-GCGU- -5'
19846 5' -67.7 NC_004687.1 + 130403 0.66 0.396663
Target:  5'- aGCaggCGCUguucgCgCUGGCCCUGGCCGCAu -3'
miRNA:   3'- aCGg--GCGGa----GgGGUCGGGGUCGGCGU- -5'
19846 5' -67.7 NC_004687.1 + 15343 0.66 0.396663
Target:  5'- gGUCCGCCUCgUCGGCaaCGuCCGCAc -3'
miRNA:   3'- aCGGGCGGAGgGGUCGggGUcGGCGU- -5'
19846 5' -67.7 NC_004687.1 + 97177 0.66 0.38877
Target:  5'- aGcCCCGCCUCUgUGGUCC-AGCgGCAc -3'
miRNA:   3'- aC-GGGCGGAGGgGUCGGGgUCGgCGU- -5'
19846 5' -67.7 NC_004687.1 + 155369 0.66 0.38877
Target:  5'- gGaCUGCCcaCCCC-GCCCCcGCCGCu -3'
miRNA:   3'- aCgGGCGGa-GGGGuCGGGGuCGGCGu -5'
19846 5' -67.7 NC_004687.1 + 39453 0.66 0.38877
Target:  5'- gGUCCGCCUCcgggugcuCCCGGCgaUCCuGCUGCc -3'
miRNA:   3'- aCGGGCGGAG--------GGGUCG--GGGuCGGCGu -5'
19846 5' -67.7 NC_004687.1 + 50175 0.66 0.38877
Target:  5'- gUGUCCGgCgacguaCUCCGGCUCCGGCuCGCc -3'
miRNA:   3'- -ACGGGCgGa-----GGGGUCGGGGUCG-GCGu -5'
19846 5' -67.7 NC_004687.1 + 15144 0.66 0.38877
Target:  5'- cGCCgGUCgggCgCCAGCCCaccaGGaCCGCGu -3'
miRNA:   3'- aCGGgCGGa--GgGGUCGGGg---UC-GGCGU- -5'
19846 5' -67.7 NC_004687.1 + 116619 0.66 0.384083
Target:  5'- cGCCUggGCCUCgCCCAGCucggucugggucuugCCCuGgCGCAg -3'
miRNA:   3'- aCGGG--CGGAG-GGGUCG---------------GGGuCgGCGU- -5'
19846 5' -67.7 NC_004687.1 + 117177 0.66 0.38098
Target:  5'- gUGCCgccggagaucagCGCCUCaCCgAuGCCCCAgGCCuGCAg -3'
miRNA:   3'- -ACGG------------GCGGAG-GGgU-CGGGGU-CGG-CGU- -5'
19846 5' -67.7 NC_004687.1 + 146906 0.66 0.38098
Target:  5'- aGCCCGUgCUgcCCCCAGUgUCAccGCCGCc -3'
miRNA:   3'- aCGGGCG-GA--GGGGUCGgGGU--CGGCGu -5'
19846 5' -67.7 NC_004687.1 + 66876 0.66 0.38098
Target:  5'- gGCCCGCCagUCCguacgcgaCAGUCUCAuGUCGCAc -3'
miRNA:   3'- aCGGGCGG--AGGg-------GUCGGGGU-CGGCGU- -5'
19846 5' -67.7 NC_004687.1 + 128048 0.66 0.373295
Target:  5'- cGCCgCGCgaCUUCCacgaGGCCCgGGcCCGCAa -3'
miRNA:   3'- aCGG-GCG--GAGGGg---UCGGGgUC-GGCGU- -5'
19846 5' -67.7 NC_004687.1 + 103781 0.66 0.373295
Target:  5'- cUGUgUGCCUuucacagucCCUCGGCCCgCcGCCGCAc -3'
miRNA:   3'- -ACGgGCGGA---------GGGGUCGGG-GuCGGCGU- -5'
19846 5' -67.7 NC_004687.1 + 56937 0.66 0.365717
Target:  5'- cGCCCGgCUCgCCCGGCuuggCCgGGCCa-- -3'
miRNA:   3'- aCGGGCgGAG-GGGUCG----GGgUCGGcgu -5'
19846 5' -67.7 NC_004687.1 + 120871 0.66 0.365717
Target:  5'- cUGCCCGCCgcgCCUgCGGCUgCCggGGCUGCu -3'
miRNA:   3'- -ACGGGCGGa--GGG-GUCGG-GG--UCGGCGu -5'
19846 5' -67.7 NC_004687.1 + 146594 0.66 0.365717
Target:  5'- aGCCCGCCggugUCCacucgCGGCgCCAG-CGCAg -3'
miRNA:   3'- aCGGGCGG----AGGg----GUCGgGGUCgGCGU- -5'
19846 5' -67.7 NC_004687.1 + 16471 0.66 0.365717
Target:  5'- cGCCCGggugaCCgucCCCCAGaCCCgCAaCCGCAu -3'
miRNA:   3'- aCGGGC-----GGa--GGGGUC-GGG-GUcGGCGU- -5'
19846 5' -67.7 NC_004687.1 + 146507 0.66 0.365717
Target:  5'- --aCCGCCa-CCCGGCCCggcgagAGCCGCGa -3'
miRNA:   3'- acgGGCGGagGGGUCGGGg-----UCGGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.