miRNA display CGI


Results 1 - 20 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19846 5' -67.7 NC_004687.1 + 2921 0.67 0.302378
Target:  5'- cGCCCGuUCUUCCCGGUCUgGGCCc-- -3'
miRNA:   3'- aCGGGC-GGAGGGGUCGGGgUCGGcgu -5'
19846 5' -67.7 NC_004687.1 + 3985 0.67 0.311651
Target:  5'- gGCCgCGCCgcgcgcguacacgauUCCCUcgauGCCgUCAGCCGCAc -3'
miRNA:   3'- aCGG-GCGG---------------AGGGGu---CGG-GGUCGGCGU- -5'
19846 5' -67.7 NC_004687.1 + 6989 0.7 0.21125
Target:  5'- cGCCCGCgUgUCCGGCCC-GGCgGCGc -3'
miRNA:   3'- aCGGGCGgAgGGGUCGGGgUCGgCGU- -5'
19846 5' -67.7 NC_004687.1 + 8474 0.66 0.365717
Target:  5'- aGCCaguGCCUCCaCGGCCCgAGgUGCu -3'
miRNA:   3'- aCGGg--CGGAGGgGUCGGGgUCgGCGu -5'
19846 5' -67.7 NC_004687.1 + 8846 0.68 0.283229
Target:  5'- -aCCCGCCagCgCgAGCCCCGGCUgGCAg -3'
miRNA:   3'- acGGGCGGa-GgGgUCGGGGUCGG-CGU- -5'
19846 5' -67.7 NC_004687.1 + 12211 0.67 0.342186
Target:  5'- cGCCCaggcguccugauuGCCgUCCUGGCCCUcaccguuGGCCGCGa -3'
miRNA:   3'- aCGGG-------------CGGaGGGGUCGGGG-------UCGGCGU- -5'
19846 5' -67.7 NC_004687.1 + 13439 0.68 0.277063
Target:  5'- cGCCCGCUUCCUgcgcgagcgcggCAuCCCCAcCCGCGa -3'
miRNA:   3'- aCGGGCGGAGGG------------GUcGGGGUcGGCGU- -5'
19846 5' -67.7 NC_004687.1 + 15144 0.66 0.38877
Target:  5'- cGCCgGUCgggCgCCAGCCCaccaGGaCCGCGu -3'
miRNA:   3'- aCGGgCGGa--GgGGUCGGGg---UC-GGCGU- -5'
19846 5' -67.7 NC_004687.1 + 15343 0.66 0.396663
Target:  5'- gGUCCGCCUCgUCGGCaaCGuCCGCAc -3'
miRNA:   3'- aCGGGCGGAGgGGUCGggGUcGGCGU- -5'
19846 5' -67.7 NC_004687.1 + 16250 0.7 0.197047
Target:  5'- aGCCCGCCUggacCCCCGcGCgcgacgCCUAGcCCGCAc -3'
miRNA:   3'- aCGGGCGGA----GGGGU-CG------GGGUC-GGCGU- -5'
19846 5' -67.7 NC_004687.1 + 16471 0.66 0.365717
Target:  5'- cGCCCGggugaCCgucCCCCAGaCCCgCAaCCGCAu -3'
miRNA:   3'- aCGGGC-----GGa--GGGGUC-GGG-GUcGGCGU- -5'
19846 5' -67.7 NC_004687.1 + 18097 0.71 0.179412
Target:  5'- gGCCCGCCgggCCCUGaccgaguucGCCCgGGCgCGCGg -3'
miRNA:   3'- aCGGGCGGa--GGGGU---------CGGGgUCG-GCGU- -5'
19846 5' -67.7 NC_004687.1 + 18493 0.8 0.03569
Target:  5'- cGCCCGCCgguacgCCCUGGCCCUgcuGGCCGCu -3'
miRNA:   3'- aCGGGCGGa-----GGGGUCGGGG---UCGGCGu -5'
19846 5' -67.7 NC_004687.1 + 18795 0.67 0.328741
Target:  5'- cGCCCGUCUggCCCAgggcaucgcuGCCgacgagaCCAGCCGCGa -3'
miRNA:   3'- aCGGGCGGAg-GGGU----------CGG-------GGUCGGCGU- -5'
19846 5' -67.7 NC_004687.1 + 23453 0.68 0.265052
Target:  5'- cGCCCGCUgCCCCGGaagucucgaCCCCgcagggcaGGCCGUu -3'
miRNA:   3'- aCGGGCGGaGGGGUC---------GGGG--------UCGGCGu -5'
19846 5' -67.7 NC_004687.1 + 25757 0.67 0.32251
Target:  5'- gGCaCCGCCgUCaCCCucgcucuuGCCCCcgucgcucaGGCCGCGc -3'
miRNA:   3'- aCG-GGCGG-AG-GGGu-------CGGGG---------UCGGCGU- -5'
19846 5' -67.7 NC_004687.1 + 26128 0.69 0.247833
Target:  5'- gGCCUGCCUCCCCGaCCaCUuuucaguuauaAGaCCGCAg -3'
miRNA:   3'- aCGGGCGGAGGGGUcGG-GG-----------UC-GGCGU- -5'
19846 5' -67.7 NC_004687.1 + 26387 0.67 0.31569
Target:  5'- gGCCCgcGCCgugaCCCGG-CCUGGCCGCu -3'
miRNA:   3'- aCGGG--CGGag--GGGUCgGGGUCGGCGu -5'
19846 5' -67.7 NC_004687.1 + 35088 0.67 0.308979
Target:  5'- -uCCCGCCgCCUggauCGGCCUCGGUCGCu -3'
miRNA:   3'- acGGGCGGaGGG----GUCGGGGUCGGCGu -5'
19846 5' -67.7 NC_004687.1 + 35696 0.66 0.365717
Target:  5'- uUGaCCUcgGCCUCCCagUAGUCCCAGgUGCGc -3'
miRNA:   3'- -AC-GGG--CGGAGGG--GUCGGGGUCgGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.