miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19847 3' -64.1 NC_004687.1 + 41394 0.66 0.542677
Target:  5'- cGcCCGGCGGggucUCC-AGGGCGaCCUCUucGCg -3'
miRNA:   3'- aC-GGUCGCC----GGGcUCCCGC-GGAGA--UG- -5'
19847 3' -64.1 NC_004687.1 + 61261 0.66 0.541725
Target:  5'- uUGCCGG-GGCuCUGAGGGUuugucaccuacauGCCUUcACa -3'
miRNA:   3'- -ACGGUCgCCG-GGCUCCCG-------------CGGAGaUG- -5'
19847 3' -64.1 NC_004687.1 + 34925 0.66 0.533178
Target:  5'- gGCUggGGCGGCacuCCGccgcaAGGGuCGCCUCcGCa -3'
miRNA:   3'- aCGG--UCGCCG---GGC-----UCCC-GCGGAGaUG- -5'
19847 3' -64.1 NC_004687.1 + 128683 0.66 0.529395
Target:  5'- cGUCGGCGGUCauccccucaacGGGCGUCUgUGCg -3'
miRNA:   3'- aCGGUCGCCGGgcu--------CCCGCGGAgAUG- -5'
19847 3' -64.1 NC_004687.1 + 131358 0.66 0.52374
Target:  5'- gGCgGGUGGUCCucGGGCGCgUUCcGCa -3'
miRNA:   3'- aCGgUCGCCGGGcuCCCGCG-GAGaUG- -5'
19847 3' -64.1 NC_004687.1 + 48897 0.66 0.52374
Target:  5'- -aCCAG-GGCCCGucccGGGCGCCggugggGCu -3'
miRNA:   3'- acGGUCgCCGGGCu---CCCGCGGaga---UG- -5'
19847 3' -64.1 NC_004687.1 + 106897 0.66 0.514366
Target:  5'- cUGCUggGGCGGCauGGGuGGCGCCgggGCg -3'
miRNA:   3'- -ACGG--UCGCCGggCUC-CCGCGGagaUG- -5'
19847 3' -64.1 NC_004687.1 + 140338 0.66 0.514366
Target:  5'- gGCCAaCGGCCUGuggcAGGuCGCCUCggGCu -3'
miRNA:   3'- aCGGUcGCCGGGC----UCCcGCGGAGa-UG- -5'
19847 3' -64.1 NC_004687.1 + 135529 0.66 0.505061
Target:  5'- -cCCGGCGGUCU--GGGCGCCgauggcCUACc -3'
miRNA:   3'- acGGUCGCCGGGcuCCCGCGGa-----GAUG- -5'
19847 3' -64.1 NC_004687.1 + 146109 0.66 0.505061
Target:  5'- aGCCGGUGGgcuaCCCGGcGGCGCCa---- -3'
miRNA:   3'- aCGGUCGCC----GGGCUcCCGCGGagaug -5'
19847 3' -64.1 NC_004687.1 + 73720 0.66 0.504134
Target:  5'- gGgCGGUGGCCUGGGcaacgucGGCGUCUCg-- -3'
miRNA:   3'- aCgGUCGCCGGGCUC-------CCGCGGAGaug -5'
19847 3' -64.1 NC_004687.1 + 77492 0.66 0.495829
Target:  5'- gGCgUAGCGGCCCGGGaaggccgaGCGCUgcaCUGCc -3'
miRNA:   3'- aCG-GUCGCCGGGCUCc-------CGCGGa--GAUG- -5'
19847 3' -64.1 NC_004687.1 + 107315 0.66 0.495829
Target:  5'- aUGCCGcugcGCGGaCCGAGGGUguagGCCUUg-- -3'
miRNA:   3'- -ACGGU----CGCCgGGCUCCCG----CGGAGaug -5'
19847 3' -64.1 NC_004687.1 + 74353 0.67 0.486674
Target:  5'- gGUCGGCugGGCaCCGuggccaAGGGUGCCggUCUGCu -3'
miRNA:   3'- aCGGUCG--CCG-GGC------UCCCGCGG--AGAUG- -5'
19847 3' -64.1 NC_004687.1 + 75153 0.67 0.486674
Target:  5'- gUGUCGGCGGCgauguaGAGGGUgcccGCCUCg-- -3'
miRNA:   3'- -ACGGUCGCCGgg----CUCCCG----CGGAGaug -5'
19847 3' -64.1 NC_004687.1 + 17921 0.67 0.4776
Target:  5'- cUGCCAGCGGCUgGAGGaCGaguucaaCUCa-- -3'
miRNA:   3'- -ACGGUCGCCGGgCUCCcGCg------GAGaug -5'
19847 3' -64.1 NC_004687.1 + 87726 0.67 0.4776
Target:  5'- cGCUGGCcgaugucgcugGGCCCGcagcuGGGCGCCg--ACg -3'
miRNA:   3'- aCGGUCG-----------CCGGGCu----CCCGCGGagaUG- -5'
19847 3' -64.1 NC_004687.1 + 33612 0.67 0.468611
Target:  5'- cGCCaaggucauGGUGGCCCacgguguGGGCGCCUauccgGCg -3'
miRNA:   3'- aCGG--------UCGCCGGGcu-----CCCGCGGAga---UG- -5'
19847 3' -64.1 NC_004687.1 + 116490 0.67 0.467716
Target:  5'- cUGCCuguGCGGCCCGGGccguggcuccgccGGUGgCUCg-- -3'
miRNA:   3'- -ACGGu--CGCCGGGCUC-------------CCGCgGAGaug -5'
19847 3' -64.1 NC_004687.1 + 148522 0.67 0.459709
Target:  5'- cGCgCGGCGGCgCGcuuGGucuGCGCCUCgGCg -3'
miRNA:   3'- aCG-GUCGCCGgGCu--CC---CGCGGAGaUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.