miRNA display CGI


Results 1 - 20 of 168 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19847 5' -54.7 NC_004687.1 + 66225 0.65 0.960985
Target:  5'- -aGCAgGAcccgGaaccaggccGCGCCGUCGGGCaccgucgAGGCg -3'
miRNA:   3'- caUGUgCUa---C---------UGCGGCAGCCUG-------UCCG- -5'
19847 5' -54.7 NC_004687.1 + 74987 0.66 0.957733
Target:  5'- cGUGCACGGccugcugcccGGCG-CGUUGGccGCAGGCc -3'
miRNA:   3'- -CAUGUGCUa---------CUGCgGCAGCC--UGUCCG- -5'
19847 5' -54.7 NC_004687.1 + 127897 0.66 0.957733
Target:  5'- -cACACcuGAUGgucguACGgCGUCGGACAGaGUc -3'
miRNA:   3'- caUGUG--CUAC-----UGCgGCAGCCUGUC-CG- -5'
19847 5' -54.7 NC_004687.1 + 47790 0.66 0.957733
Target:  5'- cGgcCAgGGUGgcuGCGCCGgUGGcGCAGGCg -3'
miRNA:   3'- -CauGUgCUAC---UGCGGCaGCC-UGUCCG- -5'
19847 5' -54.7 NC_004687.1 + 30309 0.66 0.957733
Target:  5'- aUAgGCGAauccggugcUGGCGCCcUCGGcCAGGg -3'
miRNA:   3'- cAUgUGCU---------ACUGCGGcAGCCuGUCCg -5'
19847 5' -54.7 NC_004687.1 + 107239 0.66 0.957733
Target:  5'- -cACACGGgugGGCGCC-UCGGucucgccgUAGGCc -3'
miRNA:   3'- caUGUGCUa--CUGCGGcAGCCu-------GUCCG- -5'
19847 5' -54.7 NC_004687.1 + 71285 0.66 0.957733
Target:  5'- uGUGCuCGGgauUGACGCaCGUCuuGAuCAGGCa -3'
miRNA:   3'- -CAUGuGCU---ACUGCG-GCAGc-CU-GUCCG- -5'
19847 5' -54.7 NC_004687.1 + 84168 0.66 0.957733
Target:  5'- cUugGCGAaucgcGGC-CCGUCGGugAaGGCa -3'
miRNA:   3'- cAugUGCUa----CUGcGGCAGCCugU-CCG- -5'
19847 5' -54.7 NC_004687.1 + 45584 0.66 0.957733
Target:  5'- -cGCAgGAUGGCGUCGaagguggucUCGGcCAGcGCc -3'
miRNA:   3'- caUGUgCUACUGCGGC---------AGCCuGUC-CG- -5'
19847 5' -54.7 NC_004687.1 + 135168 0.66 0.956987
Target:  5'- -gGCugGAgaccuucggcaACGUCGUCGGccuCGGGCg -3'
miRNA:   3'- caUGugCUac---------UGCGGCAGCCu--GUCCG- -5'
19847 5' -54.7 NC_004687.1 + 152839 0.66 0.953909
Target:  5'- uGUACcuCGAaGGCuUCGggggCGGGCAGGCa -3'
miRNA:   3'- -CAUGu-GCUaCUGcGGCa---GCCUGUCCG- -5'
19847 5' -54.7 NC_004687.1 + 118885 0.66 0.953909
Target:  5'- cGUGCACccgccauccGGCGCCGUCGGcgagagcCAGGa -3'
miRNA:   3'- -CAUGUGcua------CUGCGGCAGCCu------GUCCg -5'
19847 5' -54.7 NC_004687.1 + 63834 0.66 0.953909
Target:  5'- ---gGCGcgGACGCgGUCGaGGuuGGCg -3'
miRNA:   3'- caugUGCuaCUGCGgCAGC-CUguCCG- -5'
19847 5' -54.7 NC_004687.1 + 145167 0.66 0.953909
Target:  5'- aGUAcCACGAcagcGACGCCaUCGGGCGcaucgcgcggguGGCc -3'
miRNA:   3'- -CAU-GUGCUa---CUGCGGcAGCCUGU------------CCG- -5'
19847 5' -54.7 NC_004687.1 + 90273 0.66 0.953909
Target:  5'- -gAgACGGUagaGGCGCCcUCGGGCcgcuGGCa -3'
miRNA:   3'- caUgUGCUA---CUGCGGcAGCCUGu---CCG- -5'
19847 5' -54.7 NC_004687.1 + 128662 0.66 0.952718
Target:  5'- gGUGCAgGAguucuuuGCGCaCGUCGGcggucauccccucaACGGGCg -3'
miRNA:   3'- -CAUGUgCUac-----UGCG-GCAGCC--------------UGUCCG- -5'
19847 5' -54.7 NC_004687.1 + 18919 0.66 0.950273
Target:  5'- -gACGCGcUGGCGCCGguggccaaggacgccCGGAagaAGGUg -3'
miRNA:   3'- caUGUGCuACUGCGGCa--------------GCCUg--UCCG- -5'
19847 5' -54.7 NC_004687.1 + 85691 0.66 0.949858
Target:  5'- cGUGCACuuccUGAgccgcuCGCCGUCGGA--GGCu -3'
miRNA:   3'- -CAUGUGcu--ACU------GCGGCAGCCUguCCG- -5'
19847 5' -54.7 NC_004687.1 + 136578 0.66 0.949858
Target:  5'- gGUGCACGcgcugggguuGUGGCGCUGgaccCGGuCAccGGCg -3'
miRNA:   3'- -CAUGUGC----------UACUGCGGCa---GCCuGU--CCG- -5'
19847 5' -54.7 NC_004687.1 + 43369 0.66 0.949858
Target:  5'- --cCugGAccaGugGCUGUcCGGACAGGa -3'
miRNA:   3'- cauGugCUa--CugCGGCA-GCCUGUCCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.