miRNA display CGI


Results 1 - 20 of 168 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19847 5' -54.7 NC_004687.1 + 1868 0.67 0.926098
Target:  5'- -cACACGA-GcCGCC-UCGGGCguAGGCc -3'
miRNA:   3'- caUGUGCUaCuGCGGcAGCCUG--UCCG- -5'
19847 5' -54.7 NC_004687.1 + 3139 0.66 0.945135
Target:  5'- -aGCGCGAUG--GCCGUUGGgagcugaGCuGGCa -3'
miRNA:   3'- caUGUGCUACugCGGCAGCC-------UGuCCG- -5'
19847 5' -54.7 NC_004687.1 + 3312 0.71 0.747337
Target:  5'- -aGCACGAUGGCGaucggCGUCGGGuugGGGUg -3'
miRNA:   3'- caUGUGCUACUGCg----GCAGCCUg--UCCG- -5'
19847 5' -54.7 NC_004687.1 + 4430 0.72 0.715002
Target:  5'- -cACACGGUGcgguaaccaugugcAgGCCGUCGcGACuGGCg -3'
miRNA:   3'- caUGUGCUAC--------------UgCGGCAGC-CUGuCCG- -5'
19847 5' -54.7 NC_004687.1 + 5936 0.67 0.914934
Target:  5'- uGUcCAUGAUcGCGgCGUUGGGuCGGGCg -3'
miRNA:   3'- -CAuGUGCUAcUGCgGCAGCCU-GUCCG- -5'
19847 5' -54.7 NC_004687.1 + 6813 0.67 0.931323
Target:  5'- -gGCACGGUGAgCGCCcgcaGGACAGu- -3'
miRNA:   3'- caUGUGCUACU-GCGGcag-CCUGUCcg -5'
19847 5' -54.7 NC_004687.1 + 8403 0.68 0.882927
Target:  5'- -aACACG-UGGCGCgCG-CGGAUGGaGCg -3'
miRNA:   3'- caUGUGCuACUGCG-GCaGCCUGUC-CG- -5'
19847 5' -54.7 NC_004687.1 + 8999 0.66 0.945135
Target:  5'- ---gACGGUGGCGCUGgcggCGGugAcacugggGGCa -3'
miRNA:   3'- caugUGCUACUGCGGCa---GCCugU-------CCG- -5'
19847 5' -54.7 NC_004687.1 + 9220 0.68 0.889787
Target:  5'- -cGCAcCGAUGugGUaguuCGUgugCGGACGGGUg -3'
miRNA:   3'- caUGU-GCUACugCG----GCA---GCCUGUCCG- -5'
19847 5' -54.7 NC_004687.1 + 9321 0.68 0.889787
Target:  5'- cUGCGC--UGGCGCCGcgagUGGACAccGGCg -3'
miRNA:   3'- cAUGUGcuACUGCGGCa---GCCUGU--CCG- -5'
19847 5' -54.7 NC_004687.1 + 11236 0.7 0.803092
Target:  5'- -aGC-CGGuUGGCGUCGUUGGucgGCAGGCc -3'
miRNA:   3'- caUGuGCU-ACUGCGGCAGCC---UGUCCG- -5'
19847 5' -54.7 NC_004687.1 + 14474 0.7 0.820538
Target:  5'- -gGgGCGGUGugGCCGcgaugaUGGACGGGa -3'
miRNA:   3'- caUgUGCUACugCGGCa-----GCCUGUCCg -5'
19847 5' -54.7 NC_004687.1 + 15830 0.68 0.875846
Target:  5'- -aGCGCGGUGACcagGCCGgugaugUCGGACAucGGg -3'
miRNA:   3'- caUGUGCUACUG---CGGC------AGCCUGU--CCg -5'
19847 5' -54.7 NC_004687.1 + 16234 0.66 0.949858
Target:  5'- ---uGCGAggaGACcagcuuGCCGcCGGACAGGUc -3'
miRNA:   3'- caugUGCUa--CUG------CGGCaGCCUGUCCG- -5'
19847 5' -54.7 NC_004687.1 + 16385 0.66 0.949858
Target:  5'- -cGCGCGAggUGAgCGCggugaCGUCGGACuugucGGCc -3'
miRNA:   3'- caUGUGCU--ACU-GCG-----GCAGCCUGu----CCG- -5'
19847 5' -54.7 NC_004687.1 + 16659 0.67 0.926098
Target:  5'- -gGCcuUGGUGGCGacgagGUCGGACAGGUc -3'
miRNA:   3'- caUGu-GCUACUGCgg---CAGCCUGUCCG- -5'
19847 5' -54.7 NC_004687.1 + 16741 0.7 0.811897
Target:  5'- -cGCGCGAcgaacuugagGugGCCGUUGGGgguCAGGUa -3'
miRNA:   3'- caUGUGCUa---------CugCGGCAGCCU---GUCCG- -5'
19847 5' -54.7 NC_004687.1 + 16855 0.68 0.902825
Target:  5'- -cGCAgGAUGAUcUCGUCGGuggcgguguccaGCGGGCu -3'
miRNA:   3'- caUGUgCUACUGcGGCAGCC------------UGUCCG- -5'
19847 5' -54.7 NC_004687.1 + 18659 0.69 0.868548
Target:  5'- uUGCGCGGcuccuUGGCGCCGUCGcGCuuGCc -3'
miRNA:   3'- cAUGUGCU-----ACUGCGGCAGCcUGucCG- -5'
19847 5' -54.7 NC_004687.1 + 18919 0.66 0.950273
Target:  5'- -gACGCGcUGGCGCCGguggccaaggacgccCGGAagaAGGUg -3'
miRNA:   3'- caUGUGCuACUGCGGCa--------------GCCUg--UCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.