miRNA display CGI


Results 1 - 20 of 30 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19848 3' -51.1 NC_004687.1 + 111000 0.66 0.993128
Target:  5'- aCACCcgcGAccGGGAGAacgcgcuggCCAUGggGAugGGCu -3'
miRNA:   3'- -GUGGu--CU--CCCUCUa--------GGUACuuCU--UCG- -5'
19848 3' -51.1 NC_004687.1 + 52370 0.66 0.993028
Target:  5'- gGCCGGuGGGAGA-CCAaggucugcccaugUGGAGucgaguuccaGAGCg -3'
miRNA:   3'- gUGGUCuCCCUCUaGGU-------------ACUUC----------UUCG- -5'
19848 3' -51.1 NC_004687.1 + 29273 0.66 0.992083
Target:  5'- uCACCAGAagaaaaguGGGAGAucaagcaacuggUCCAcc-AGGAGCu -3'
miRNA:   3'- -GUGGUCU--------CCCUCU------------AGGUacuUCUUCG- -5'
19848 3' -51.1 NC_004687.1 + 107776 0.66 0.992083
Target:  5'- gGCCGGGGGGGcGggCCAccGAGGAAc- -3'
miRNA:   3'- gUGGUCUCCCU-CuaGGUa-CUUCUUcg -5'
19848 3' -51.1 NC_004687.1 + 101976 0.66 0.990916
Target:  5'- gCGCCGGGcggaguguucGGG-GGUCCAggcagggucaUGggGAAGUc -3'
miRNA:   3'- -GUGGUCU----------CCCuCUAGGU----------ACuuCUUCG- -5'
19848 3' -51.1 NC_004687.1 + 53877 0.66 0.990154
Target:  5'- -uCCGGAGGGGGucucucgcauGUCCGagguccaugaauagaUGAGGAGGa -3'
miRNA:   3'- guGGUCUCCCUC----------UAGGU---------------ACUUCUUCg -5'
19848 3' -51.1 NC_004687.1 + 24130 0.66 0.989618
Target:  5'- aGCCuccGAGGGAGGUgCUAggGAaccuaccucGGAGGCa -3'
miRNA:   3'- gUGGu--CUCCCUCUA-GGUa-CU---------UCUUCG- -5'
19848 3' -51.1 NC_004687.1 + 115316 0.66 0.989618
Target:  5'- uCACCcacaaGGAGAUCCAUG-AGcAGCg -3'
miRNA:   3'- -GUGGucuc-CCUCUAGGUACuUCuUCG- -5'
19848 3' -51.1 NC_004687.1 + 153669 0.66 0.98818
Target:  5'- uCACC-GAGGaGuGAUCaa-GAAGAAGCc -3'
miRNA:   3'- -GUGGuCUCC-CuCUAGguaCUUCUUCG- -5'
19848 3' -51.1 NC_004687.1 + 37048 0.66 0.988028
Target:  5'- cCACCacgaucaAGGGuGGAGAUCC--GAAGuGGCa -3'
miRNA:   3'- -GUGG-------UCUC-CCUCUAGGuaCUUCuUCG- -5'
19848 3' -51.1 NC_004687.1 + 98762 0.67 0.986591
Target:  5'- uCACCGGcGuGGAGAa-CAUGAAGAcGCc -3'
miRNA:   3'- -GUGGUCuC-CCUCUagGUACUUCUuCG- -5'
19848 3' -51.1 NC_004687.1 + 75685 0.67 0.984844
Target:  5'- gCACCGGAuGGGGAg----GggGAGGCu -3'
miRNA:   3'- -GUGGUCUcCCUCUagguaCuuCUUCG- -5'
19848 3' -51.1 NC_004687.1 + 143843 0.67 0.983715
Target:  5'- cCGCCcuguGAGGuGAGcgCUgaccuccucgaauagGUGAGGAGGCa -3'
miRNA:   3'- -GUGGu---CUCC-CUCuaGG---------------UACUUCUUCG- -5'
19848 3' -51.1 NC_004687.1 + 3591 0.67 0.982928
Target:  5'- gCACguGguGGGGAGAUggAUGAuGAAGCg -3'
miRNA:   3'- -GUGguC--UCCCUCUAggUACUuCUUCG- -5'
19848 3' -51.1 NC_004687.1 + 57744 0.67 0.982928
Target:  5'- gGCCAGGuGGGGAaugCCAgGAAGGucAGCg -3'
miRNA:   3'- gUGGUCUcCCUCUa--GGUaCUUCU--UCG- -5'
19848 3' -51.1 NC_004687.1 + 82742 0.67 0.980835
Target:  5'- gCugCAGAcGccGGUCCAUGAAGAuGGCg -3'
miRNA:   3'- -GugGUCUcCcuCUAGGUACUUCU-UCG- -5'
19848 3' -51.1 NC_004687.1 + 132952 0.67 0.978556
Target:  5'- --aCGGuGGGGuuguGGUCCGUGAGGAAuuGCa -3'
miRNA:   3'- gugGUCuCCCU----CUAGGUACUUCUU--CG- -5'
19848 3' -51.1 NC_004687.1 + 20059 0.67 0.978556
Target:  5'- cCACCAGAuguGGGcGAUUCGUGAGcu-GCa -3'
miRNA:   3'- -GUGGUCU---CCCuCUAGGUACUUcuuCG- -5'
19848 3' -51.1 NC_004687.1 + 82715 0.68 0.973407
Target:  5'- gGCCAa--GGAGAUCC-UGgcGAAGCu -3'
miRNA:   3'- gUGGUcucCCUCUAGGuACuuCUUCG- -5'
19848 3' -51.1 NC_004687.1 + 58146 0.68 0.973128
Target:  5'- gGCCAgGAGGGaAGA-CUgauggcgcuggauAUGGAGAAGCu -3'
miRNA:   3'- gUGGU-CUCCC-UCUaGG-------------UACUUCUUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.