miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19848 5' -54.9 NC_004687.1 + 113120 0.66 0.951014
Target:  5'- cGACgcggaCAUUGCCGaCCGGcgagaaggccacacAUCACCCc -3'
miRNA:   3'- cCUGa----GUAACGGC-GGCCa-------------UAGUGGGa -5'
19848 5' -54.9 NC_004687.1 + 147276 0.66 0.949347
Target:  5'- gGGGCgUGUUGUCGUCGGUcugcgggugaggGUCgACCCg -3'
miRNA:   3'- -CCUGaGUAACGGCGGCCA------------UAG-UGGGa -5'
19848 5' -54.9 NC_004687.1 + 68228 0.66 0.949347
Target:  5'- aGGAgucCUCGaUGCCGUCGGagAUguCCCa -3'
miRNA:   3'- -CCU---GAGUaACGGCGGCCa-UAguGGGa -5'
19848 5' -54.9 NC_004687.1 + 146586 0.66 0.949347
Target:  5'- aGGCaCGUaGcCCGCCGGUGUcCACUCg -3'
miRNA:   3'- cCUGaGUAaC-GGCGGCCAUA-GUGGGa -5'
19848 5' -54.9 NC_004687.1 + 84384 0.66 0.945015
Target:  5'- cGGGCUCuugaucagcUUGCgGCaGGUGaccUCGCCCa -3'
miRNA:   3'- -CCUGAGu--------AACGgCGgCCAU---AGUGGGa -5'
19848 5' -54.9 NC_004687.1 + 3763 0.66 0.945015
Target:  5'- uGGGCUg---GCCGCUGGUcAUCauggccgcgcugGCCCUg -3'
miRNA:   3'- -CCUGAguaaCGGCGGCCA-UAG------------UGGGA- -5'
19848 5' -54.9 NC_004687.1 + 11385 0.66 0.940447
Target:  5'- gGGugUCucgccgaaGCUGCCGGUGUggugagccaccaCGCCCc -3'
miRNA:   3'- -CCugAGuaa-----CGGCGGCCAUA------------GUGGGa -5'
19848 5' -54.9 NC_004687.1 + 78020 0.66 0.940447
Target:  5'- uGGGCUCccacaCCGCCagaGGUgucAUCGCCCa -3'
miRNA:   3'- -CCUGAGuaac-GGCGG---CCA---UAGUGGGa -5'
19848 5' -54.9 NC_004687.1 + 38581 0.66 0.940447
Target:  5'- -aGCUUggUGcCCGCCGGgguguUCACCUg -3'
miRNA:   3'- ccUGAGuaAC-GGCGGCCau---AGUGGGa -5'
19848 5' -54.9 NC_004687.1 + 97039 0.66 0.937592
Target:  5'- cGGAuCUCGaUGuacugcuugcgcuuaCCGUCGGgGUCACCCUu -3'
miRNA:   3'- -CCU-GAGUaAC---------------GGCGGCCaUAGUGGGA- -5'
19848 5' -54.9 NC_004687.1 + 135459 0.66 0.937592
Target:  5'- cGACUCGccUGgUGCCGGacgcgcucgugccgAUCGCCCUg -3'
miRNA:   3'- cCUGAGUa-ACgGCGGCCa-------------UAGUGGGA- -5'
19848 5' -54.9 NC_004687.1 + 36187 0.66 0.935641
Target:  5'- -aGC-CGUUGCCGCCGGgcGUCAUguaCCg -3'
miRNA:   3'- ccUGaGUAACGGCGGCCa-UAGUG---GGa -5'
19848 5' -54.9 NC_004687.1 + 143464 0.66 0.935641
Target:  5'- cGGugUCAc-GCCGCUcaagAUCGCCCa -3'
miRNA:   3'- -CCugAGUaaCGGCGGcca-UAGUGGGa -5'
19848 5' -54.9 NC_004687.1 + 63449 0.66 0.930595
Target:  5'- aGGGCgUCAUUGUCGCCauacGG-GUC-CCCg -3'
miRNA:   3'- -CCUG-AGUAACGGCGG----CCaUAGuGGGa -5'
19848 5' -54.9 NC_004687.1 + 9416 0.67 0.922023
Target:  5'- cGGCUCuc-GCCggGCCGGguggcgguguacagAUCGCCCUg -3'
miRNA:   3'- cCUGAGuaaCGG--CGGCCa-------------UAGUGGGA- -5'
19848 5' -54.9 NC_004687.1 + 73869 0.67 0.919783
Target:  5'- cGGuCggGUUGCCGCCGGacgcgCugCCa -3'
miRNA:   3'- -CCuGagUAACGGCGGCCaua--GugGGa -5'
19848 5' -54.9 NC_004687.1 + 20724 0.67 0.919783
Target:  5'- uGGugUa---GCCcuGCCGGUcgCGCCCg -3'
miRNA:   3'- -CCugAguaaCGG--CGGCCAuaGUGGGa -5'
19848 5' -54.9 NC_004687.1 + 44481 0.67 0.917506
Target:  5'- gGGugUCGgcgggacccccggUGCCGCUGG---CACCCg -3'
miRNA:   3'- -CCugAGUa------------ACGGCGGCCauaGUGGGa -5'
19848 5' -54.9 NC_004687.1 + 39473 0.67 0.914017
Target:  5'- cGGCgauccUGCUGCCGGUGgccCGCCCc -3'
miRNA:   3'- cCUGagua-ACGGCGGCCAUa--GUGGGa -5'
19848 5' -54.9 NC_004687.1 + 144347 0.67 0.914017
Target:  5'- uGACcCAcagUGCCGCCGuGg--CACCCa -3'
miRNA:   3'- cCUGaGUa--ACGGCGGC-CauaGUGGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.