miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19850 3' -52 NC_004687.1 + 73910 0.66 0.986597
Target:  5'- -uCUACGCCAACAUgauggccgcgcgcggCCaggCGGUGAa -3'
miRNA:   3'- cuGAUGCGGUUGUA---------------GGcaaGCCACUa -5'
19850 3' -52 NC_004687.1 + 54365 0.66 0.98592
Target:  5'- cGGCUACGCCGccgggACcgCCGaacCGGUGu- -3'
miRNA:   3'- -CUGAUGCGGU-----UGuaGGCaa-GCCACua -5'
19850 3' -52 NC_004687.1 + 73801 0.66 0.98592
Target:  5'- aGGCUACGUCAAC--CCGUUCGccgGAc -3'
miRNA:   3'- -CUGAUGCGGUUGuaGGCAAGCca-CUa -5'
19850 3' -52 NC_004687.1 + 101997 0.66 0.98592
Target:  5'- uGCgcacCGCCAugGUCCGgucgccgacgCGGUGAc -3'
miRNA:   3'- cUGau--GCGGUugUAGGCaa--------GCCACUa -5'
19850 3' -52 NC_004687.1 + 147251 0.66 0.98592
Target:  5'- cACU-CGCCAguucaaggACAUCCGcaacaCGGUGAUg -3'
miRNA:   3'- cUGAuGCGGU--------UGUAGGCaa---GCCACUA- -5'
19850 3' -52 NC_004687.1 + 113941 0.66 0.984113
Target:  5'- -uCUGCGCCAAC-UCCGUcgaGG-GAUa -3'
miRNA:   3'- cuGAUGCGGUUGuAGGCAag-CCaCUA- -5'
19850 3' -52 NC_004687.1 + 99558 0.66 0.982341
Target:  5'- cGCUACGCCAGCugggcgugcgguuguUCCaGUUCGGa--- -3'
miRNA:   3'- cUGAUGCGGUUGu--------------AGG-CAAGCCacua -5'
19850 3' -52 NC_004687.1 + 67199 0.66 0.982135
Target:  5'- -uCUGCGCUGGCGUUgGgcauggugUCGGUGAc -3'
miRNA:   3'- cuGAUGCGGUUGUAGgCa-------AGCCACUa -5'
19850 3' -52 NC_004687.1 + 20604 0.67 0.972342
Target:  5'- cGCUGCGCgAGCGUgccacCCGgcUGGUGAc -3'
miRNA:   3'- cUGAUGCGgUUGUA-----GGCaaGCCACUa -5'
19850 3' -52 NC_004687.1 + 75314 0.67 0.969383
Target:  5'- cGGCUugGCC-GCGUCCGa--GGUGu- -3'
miRNA:   3'- -CUGAugCGGuUGUAGGCaagCCACua -5'
19850 3' -52 NC_004687.1 + 11528 0.68 0.955294
Target:  5'- cGCcGCGCCAguucGgGUCCGgggCGGUGAUc -3'
miRNA:   3'- cUGaUGCGGU----UgUAGGCaa-GCCACUA- -5'
19850 3' -52 NC_004687.1 + 111159 0.68 0.946819
Target:  5'- cGCUGCgGCgCGGCGcCCGUcCGGUGAUg -3'
miRNA:   3'- cUGAUG-CG-GUUGUaGGCAaGCCACUA- -5'
19850 3' -52 NC_004687.1 + 84322 0.68 0.946819
Target:  5'- aACaGCGCCGACcccacgCCG-UCGGUGGUg -3'
miRNA:   3'- cUGaUGCGGUUGua----GGCaAGCCACUA- -5'
19850 3' -52 NC_004687.1 + 40472 0.68 0.946819
Target:  5'- ----cCGCCGACGUCguCGUggUCGGUGAUg -3'
miRNA:   3'- cugauGCGGUUGUAG--GCA--AGCCACUA- -5'
19850 3' -52 NC_004687.1 + 55186 0.69 0.926865
Target:  5'- cGACUACGCCAAgcUCaUGgcCGGUGAg -3'
miRNA:   3'- -CUGAUGCGGUUguAG-GCaaGCCACUa -5'
19850 3' -52 NC_004687.1 + 138760 0.69 0.926865
Target:  5'- aGCUcgACGCCGACgAUCCc-UCGGUGAc -3'
miRNA:   3'- cUGA--UGCGGUUG-UAGGcaAGCCACUa -5'
19850 3' -52 NC_004687.1 + 32705 0.7 0.909229
Target:  5'- -cCUGCGCCGgggugaucucgACA-CCGUgcUCGGUGAUg -3'
miRNA:   3'- cuGAUGCGGU-----------UGUaGGCA--AGCCACUA- -5'
19850 3' -52 NC_004687.1 + 132739 0.7 0.902844
Target:  5'- gGACg--GCCAcGCGUCCGUcggcgcugUCGGUGAUg -3'
miRNA:   3'- -CUGaugCGGU-UGUAGGCA--------AGCCACUA- -5'
19850 3' -52 NC_004687.1 + 76035 0.7 0.896211
Target:  5'- cGACgGCGCCAugaugguCAUCUGggUGGUGAa -3'
miRNA:   3'- -CUGaUGCGGUu------GUAGGCaaGCCACUa -5'
19850 3' -52 NC_004687.1 + 64672 1.05 0.011712
Target:  5'- gGACUACGCCAACAUCCGUUCGGUGAUc -3'
miRNA:   3'- -CUGAUGCGGUUGUAGGCAAGCCACUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.