miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19850 5' -58 NC_004687.1 + 80736 0.66 0.850251
Target:  5'- cUCcUCGCCGGUgaccuUCUCGUagaggGCCUCGg-- -3'
miRNA:   3'- -AGuAGUGGCCG-----AGAGCG-----CGGAGCaga -5'
19850 5' -58 NC_004687.1 + 40736 0.66 0.842378
Target:  5'- uUCGUCAUCGGCggcaucCUUGCGgCU-GUCg -3'
miRNA:   3'- -AGUAGUGGCCGa-----GAGCGCgGAgCAGa -5'
19850 5' -58 NC_004687.1 + 29067 0.66 0.842378
Target:  5'- -aAUC-CgGGCUCa-GCGCCUCGUg- -3'
miRNA:   3'- agUAGuGgCCGAGagCGCGGAGCAga -5'
19850 5' -58 NC_004687.1 + 62657 0.66 0.83998
Target:  5'- gUCAUCGCgGcGCUCUCGCcuuCCccauggggaacagcUCGUCg -3'
miRNA:   3'- -AGUAGUGgC-CGAGAGCGc--GG--------------AGCAGa -5'
19850 5' -58 NC_004687.1 + 84296 0.66 0.839178
Target:  5'- gCGUCAUCGuGCcgauguugaucugCUCGC-CCUCGUCg -3'
miRNA:   3'- aGUAGUGGC-CGa------------GAGCGcGGAGCAGa -5'
19850 5' -58 NC_004687.1 + 17105 0.66 0.834322
Target:  5'- aUCGUCACCGGCggacgcaugaCUCGCGgCgugCG-Cg -3'
miRNA:   3'- -AGUAGUGGCCGa---------GAGCGCgGa--GCaGa -5'
19850 5' -58 NC_004687.1 + 101800 0.66 0.826087
Target:  5'- aCGUCGCCGGggCgCuCGCUUCGUCc -3'
miRNA:   3'- aGUAGUGGCCgaGaGcGCGGAGCAGa -5'
19850 5' -58 NC_004687.1 + 599 0.66 0.821064
Target:  5'- cUCAgCACCagGGCcaccagcgccaucauUUUCGCGCCUCGaUCUu -3'
miRNA:   3'- -AGUaGUGG--CCG---------------AGAGCGCGGAGC-AGA- -5'
19850 5' -58 NC_004687.1 + 142286 0.66 0.817682
Target:  5'- --cUCAUCGGUUCa-GCGCCaguUCGUCg -3'
miRNA:   3'- aguAGUGGCCGAGagCGCGG---AGCAGa -5'
19850 5' -58 NC_004687.1 + 16035 0.67 0.809114
Target:  5'- aCAUCACCaGCgacuacCUCGaCGCCgaCGUCg -3'
miRNA:   3'- aGUAGUGGcCGa-----GAGC-GCGGa-GCAGa -5'
19850 5' -58 NC_004687.1 + 139032 0.67 0.791521
Target:  5'- ---gCGCUGGCggUCG-GCCUCGUCg -3'
miRNA:   3'- aguaGUGGCCGagAGCgCGGAGCAGa -5'
19850 5' -58 NC_004687.1 + 108310 0.67 0.790626
Target:  5'- aCGUCACCgGGCUugccgagCUCGCcGCCggauacCGUCg -3'
miRNA:   3'- aGUAGUGG-CCGA-------GAGCG-CGGa-----GCAGa -5'
19850 5' -58 NC_004687.1 + 25764 0.67 0.773372
Target:  5'- cCGUCACCcucGCUCUUGC-CCcCGUCg -3'
miRNA:   3'- aGUAGUGGc--CGAGAGCGcGGaGCAGa -5'
19850 5' -58 NC_004687.1 + 79922 0.68 0.754736
Target:  5'- aUCGUCaaGCUGGCcagcgacaUCUCGCGCgC-CGUCg -3'
miRNA:   3'- -AGUAG--UGGCCG--------AGAGCGCG-GaGCAGa -5'
19850 5' -58 NC_004687.1 + 74833 0.68 0.706469
Target:  5'- aCAUCcUCGGCgagCUUGCcagggugaccGCCUCGUCg -3'
miRNA:   3'- aGUAGuGGCCGa--GAGCG----------CGGAGCAGa -5'
19850 5' -58 NC_004687.1 + 119220 0.68 0.706469
Target:  5'- ---cCAUCGGCgucCUCGCGguCCUCGUCc -3'
miRNA:   3'- aguaGUGGCCGa--GAGCGC--GGAGCAGa -5'
19850 5' -58 NC_004687.1 + 124155 0.68 0.706469
Target:  5'- gUCGUaauCCGGCUCcaUGCGCUUgGUCUg -3'
miRNA:   3'- -AGUAgu-GGCCGAGa-GCGCGGAgCAGA- -5'
19850 5' -58 NC_004687.1 + 64074 0.69 0.696599
Target:  5'- cUCcUCGCgGGCcagCUCGuCGaCCUCGUCg -3'
miRNA:   3'- -AGuAGUGgCCGa--GAGC-GC-GGAGCAGa -5'
19850 5' -58 NC_004687.1 + 106310 0.69 0.68767
Target:  5'- gUCAUCGCCGGUgagCUCcucgGCGCCggggcccgaguucacCGUCg -3'
miRNA:   3'- -AGUAGUGGCCGa--GAG----CGCGGa--------------GCAGa -5'
19850 5' -58 NC_004687.1 + 85320 0.69 0.686676
Target:  5'- cCAUCAagCGGCUCuUCGUGCCgUCGcCg -3'
miRNA:   3'- aGUAGUg-GCCGAG-AGCGCGG-AGCaGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.