miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19851 3' -51.9 NC_004687.1 + 101572 0.66 0.980658
Target:  5'- aCUCCCggGCGGucuGGcCGGUgccGUAGUGGa -3'
miRNA:   3'- aGAGGGgaCGUC---UC-GUCAa--UAUCACC- -5'
19851 3' -51.9 NC_004687.1 + 6869 0.66 0.980438
Target:  5'- --gCCggggCUGCGGGGCGGUUcguucugGUGGUGGu -3'
miRNA:   3'- agaGGg---GACGUCUCGUCAA-------UAUCACC- -5'
19851 3' -51.9 NC_004687.1 + 81636 0.67 0.978374
Target:  5'- --aCCagaaCUGCGGcGGCGGcgGUGGUGGa -3'
miRNA:   3'- agaGGg---GACGUC-UCGUCaaUAUCACC- -5'
19851 3' -51.9 NC_004687.1 + 57813 0.67 0.978374
Target:  5'- aCggCCC-GCAGAGCGGaUUcAUGGUGGc -3'
miRNA:   3'- aGagGGGaCGUCUCGUC-AA-UAUCACC- -5'
19851 3' -51.9 NC_004687.1 + 96457 0.67 0.975897
Target:  5'- gUCUCCCCUGCGGcuccGCcGUcAUAGcucaguUGGu -3'
miRNA:   3'- -AGAGGGGACGUCu---CGuCAaUAUC------ACC- -5'
19851 3' -51.9 NC_004687.1 + 149058 0.67 0.973218
Target:  5'- cCUCCCCUGCGGcGCGGa-------- -3'
miRNA:   3'- aGAGGGGACGUCuCGUCaauaucacc -5'
19851 3' -51.9 NC_004687.1 + 2180 0.68 0.956551
Target:  5'- -gUCCCCaccGCAGAGCcAGUccacGGUGGu -3'
miRNA:   3'- agAGGGGa--CGUCUCG-UCAaua-UCACC- -5'
19851 3' -51.9 NC_004687.1 + 22140 0.68 0.948246
Target:  5'- aCUCgCCCUaCAGcaaGGUUAUAGUGGg -3'
miRNA:   3'- aGAG-GGGAcGUCucgUCAAUAUCACC- -5'
19851 3' -51.9 NC_004687.1 + 17929 0.69 0.928648
Target:  5'- --cCUCCUGCAuGAGCcGGUUggccGUGGUGGu -3'
miRNA:   3'- agaGGGGACGU-CUCG-UCAA----UAUCACC- -5'
19851 3' -51.9 NC_004687.1 + 133331 0.71 0.877371
Target:  5'- cCUCCUUUcGguGGGUGGUgGUAGUGGg -3'
miRNA:   3'- aGAGGGGA-CguCUCGUCAaUAUCACC- -5'
19851 3' -51.9 NC_004687.1 + 33070 0.71 0.854195
Target:  5'- aCUCCCggGCAGGGUAcGUgugcguuccaUGUGGUGGa -3'
miRNA:   3'- aGAGGGgaCGUCUCGU-CA----------AUAUCACC- -5'
19851 3' -51.9 NC_004687.1 + 10967 0.76 0.588224
Target:  5'- gUCUUCaCCUGCuGAGCAGg---GGUGGa -3'
miRNA:   3'- -AGAGG-GGACGuCUCGUCaauaUCACC- -5'
19851 3' -51.9 NC_004687.1 + 64571 1.12 0.004381
Target:  5'- cUCUCCCCUGCAGAGCAGUUAUAGUGGa -3'
miRNA:   3'- -AGAGGGGACGUCUCGUCAAUAUCACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.