miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19851 5' -54.9 NC_004687.1 + 23297 0.66 0.937487
Target:  5'- gGCCuacgaGCGCgaGCUCGCuCAGGAGgAGcgCa -3'
miRNA:   3'- gCGG-----UGCG--UGAGUGuGUCCUC-UCuaG- -5'
19851 5' -54.9 NC_004687.1 + 96834 0.66 0.937487
Target:  5'- aGCCACGCcCUagccaGCACAGGuccucuGGGggCu -3'
miRNA:   3'- gCGGUGCGuGAg----UGUGUCCu-----CUCuaG- -5'
19851 5' -54.9 NC_004687.1 + 138479 0.66 0.934521
Target:  5'- gGuCCugGCGCUCGCACAgccgcgcggacagccGGAGGccauGUCg -3'
miRNA:   3'- gC-GGugCGUGAGUGUGU---------------CCUCUc---UAG- -5'
19851 5' -54.9 NC_004687.1 + 6870 0.66 0.932495
Target:  5'- uCGUC-CGCGC-CGCAgGGGAGGaAUCg -3'
miRNA:   3'- -GCGGuGCGUGaGUGUgUCCUCUcUAG- -5'
19851 5' -54.9 NC_004687.1 + 155131 0.66 0.932495
Target:  5'- gGCCagcagguggGCGUACUUGCGCAGGcuguAGAuGGUCc -3'
miRNA:   3'- gCGG---------UGCGUGAGUGUGUCC----UCU-CUAG- -5'
19851 5' -54.9 NC_004687.1 + 40957 0.66 0.932495
Target:  5'- uGCCGCGUcCUCgcgggGCACGGcGAGcAGGUUg -3'
miRNA:   3'- gCGGUGCGuGAG-----UGUGUC-CUC-UCUAG- -5'
19851 5' -54.9 NC_004687.1 + 35387 0.66 0.929384
Target:  5'- aGCCACGCGCggcgcaugauggcgCGCACGGcAGGcAUCg -3'
miRNA:   3'- gCGGUGCGUGa-------------GUGUGUCcUCUcUAG- -5'
19851 5' -54.9 NC_004687.1 + 142484 0.66 0.927261
Target:  5'- uGCCGCGC--UCGCGCAGGaAGcGggCg -3'
miRNA:   3'- gCGGUGCGugAGUGUGUCC-UCuCuaG- -5'
19851 5' -54.9 NC_004687.1 + 13382 0.66 0.927261
Target:  5'- -aCCACuCACcCACACAGGAGccgaaauguccaAGGUCa -3'
miRNA:   3'- gcGGUGcGUGaGUGUGUCCUC------------UCUAG- -5'
19851 5' -54.9 NC_004687.1 + 64963 0.66 0.927261
Target:  5'- uCGCCGCuccaccCACcCACAcCAGaGGGAGAUCc -3'
miRNA:   3'- -GCGGUGc-----GUGaGUGU-GUC-CUCUCUAG- -5'
19851 5' -54.9 NC_004687.1 + 17023 0.66 0.926724
Target:  5'- gGUCGCGCugaagcaguaccgGCUgcugACugAGGAGGGAUCu -3'
miRNA:   3'- gCGGUGCG-------------UGAg---UGugUCCUCUCUAG- -5'
19851 5' -54.9 NC_004687.1 + 134366 0.66 0.920091
Target:  5'- aGCCuuggcCGCGCUCACgaccgccgggcgggACAGGA-AGGUCc -3'
miRNA:   3'- gCGGu----GCGUGAGUG--------------UGUCCUcUCUAG- -5'
19851 5' -54.9 NC_004687.1 + 53189 0.67 0.91606
Target:  5'- aCGaCACGCACUCACACacgaaAGGcAGAccGAUg -3'
miRNA:   3'- -GCgGUGCGUGAGUGUG-----UCC-UCU--CUAg -5'
19851 5' -54.9 NC_004687.1 + 96440 0.67 0.91606
Target:  5'- uGUgAuCGCGCUCACAgAGGAacacGGGUCg -3'
miRNA:   3'- gCGgU-GCGUGAGUGUgUCCUc---UCUAG- -5'
19851 5' -54.9 NC_004687.1 + 15978 0.67 0.910095
Target:  5'- aGacaCACGCACUCACGaAGGAGucuGAc- -3'
miRNA:   3'- gCg--GUGCGUGAGUGUgUCCUCu--CUag -5'
19851 5' -54.9 NC_004687.1 + 130853 0.67 0.910095
Target:  5'- gGCCGgGCACggcaUCACcUGGGAGAuGGUCc -3'
miRNA:   3'- gCGGUgCGUG----AGUGuGUCCUCU-CUAG- -5'
19851 5' -54.9 NC_004687.1 + 117818 0.67 0.909485
Target:  5'- gGCUACGCGCU-GCAgcccugcCAGGAGgccuGGGUCa -3'
miRNA:   3'- gCGGUGCGUGAgUGU-------GUCCUC----UCUAG- -5'
19851 5' -54.9 NC_004687.1 + 38495 0.67 0.903889
Target:  5'- gGCCGgGCACccgggUCACACcGGGGcgguuGAUCg -3'
miRNA:   3'- gCGGUgCGUG-----AGUGUGuCCUCu----CUAG- -5'
19851 5' -54.9 NC_004687.1 + 65816 0.67 0.897445
Target:  5'- gGUgACGCGCUgCGCGCAGGcggguGGGAa- -3'
miRNA:   3'- gCGgUGCGUGA-GUGUGUCCu----CUCUag -5'
19851 5' -54.9 NC_004687.1 + 59967 0.67 0.897445
Target:  5'- gGCCACaGCACUCcCACc-GAG-GAUCg -3'
miRNA:   3'- gCGGUG-CGUGAGuGUGucCUCuCUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.