Results 1 - 20 of 53 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19851 | 5' | -54.9 | NC_004687.1 | + | 5960 | 0.72 | 0.635122 |
Target: 5'- gGgCGCGCAUcuUCAUGCGGGuGAGGUCc -3' miRNA: 3'- gCgGUGCGUG--AGUGUGUCCuCUCUAG- -5' |
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19851 | 5' | -54.9 | NC_004687.1 | + | 6142 | 0.7 | 0.766067 |
Target: 5'- gGCCACgGCGCgcaugccaaguUCACcauGCGGGAGAGcAUCu -3' miRNA: 3'- gCGGUG-CGUG-----------AGUG---UGUCCUCUC-UAG- -5' |
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19851 | 5' | -54.9 | NC_004687.1 | + | 6870 | 0.66 | 0.932495 |
Target: 5'- uCGUC-CGCGC-CGCAgGGGAGGaAUCg -3' miRNA: 3'- -GCGGuGCGUGaGUGUgUCCUCUcUAG- -5' |
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19851 | 5' | -54.9 | NC_004687.1 | + | 13099 | 0.69 | 0.812101 |
Target: 5'- uCGCCAacaccgcgcUGCGCUCGCGCucGGAGGGcggcaacgGUCg -3' miRNA: 3'- -GCGGU---------GCGUGAGUGUGu-CCUCUC--------UAG- -5' |
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19851 | 5' | -54.9 | NC_004687.1 | + | 13382 | 0.66 | 0.927261 |
Target: 5'- -aCCACuCACcCACACAGGAGccgaaauguccaAGGUCa -3' miRNA: 3'- gcGGUGcGUGaGUGUGUCCUC------------UCUAG- -5' |
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19851 | 5' | -54.9 | NC_004687.1 | + | 15978 | 0.67 | 0.910095 |
Target: 5'- aGacaCACGCACUCACGaAGGAGucuGAc- -3' miRNA: 3'- gCg--GUGCGUGAGUGUgUCCUCu--CUag -5' |
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19851 | 5' | -54.9 | NC_004687.1 | + | 17023 | 0.66 | 0.926724 |
Target: 5'- gGUCGCGCugaagcaguaccgGCUgcugACugAGGAGGGAUCu -3' miRNA: 3'- gCGGUGCG-------------UGAg---UGugUCCUCUCUAG- -5' |
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19851 | 5' | -54.9 | NC_004687.1 | + | 23297 | 0.66 | 0.937487 |
Target: 5'- gGCCuacgaGCGCgaGCUCGCuCAGGAGgAGcgCa -3' miRNA: 3'- gCGG-----UGCG--UGAGUGuGUCCUC-UCuaG- -5' |
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19851 | 5' | -54.9 | NC_004687.1 | + | 23897 | 0.68 | 0.853983 |
Target: 5'- gGCuCACuCACUCACaaaccACAGGAcGGGGUCc -3' miRNA: 3'- gCG-GUGcGUGAGUG-----UGUCCU-CUCUAG- -5' |
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19851 | 5' | -54.9 | NC_004687.1 | + | 31656 | 0.67 | 0.883854 |
Target: 5'- aGCCugGCccagGCUCGCccGCAGGucGAcGGUCa -3' miRNA: 3'- gCGGugCG----UGAGUG--UGUCCu-CU-CUAG- -5' |
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19851 | 5' | -54.9 | NC_004687.1 | + | 34546 | 0.7 | 0.779312 |
Target: 5'- gCGCgAUGCACUCGCGCAcguagucgaacuucuGGA-AGAUCu -3' miRNA: 3'- -GCGgUGCGUGAGUGUGU---------------CCUcUCUAG- -5' |
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19851 | 5' | -54.9 | NC_004687.1 | + | 35387 | 0.66 | 0.929384 |
Target: 5'- aGCCACGCGCggcgcaugauggcgCGCACGGcAGGcAUCg -3' miRNA: 3'- gCGGUGCGUGa-------------GUGUGUCcUCUcUAG- -5' |
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19851 | 5' | -54.9 | NC_004687.1 | + | 38004 | 0.72 | 0.635122 |
Target: 5'- gCGCUgACgGCACUCACGCAGGAaccgGAuGGUCu -3' miRNA: 3'- -GCGG-UG-CGUGAGUGUGUCCU----CU-CUAG- -5' |
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19851 | 5' | -54.9 | NC_004687.1 | + | 38495 | 0.67 | 0.903889 |
Target: 5'- gGCCGgGCACccgggUCACACcGGGGcgguuGAUCg -3' miRNA: 3'- gCGGUgCGUG-----AGUGUGuCCUCu----CUAG- -5' |
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19851 | 5' | -54.9 | NC_004687.1 | + | 40957 | 0.66 | 0.932495 |
Target: 5'- uGCCGCGUcCUCgcgggGCACGGcGAGcAGGUUg -3' miRNA: 3'- gCGGUGCGuGAG-----UGUGUC-CUC-UCUAG- -5' |
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19851 | 5' | -54.9 | NC_004687.1 | + | 45571 | 0.71 | 0.706928 |
Target: 5'- gGUCACcCGCUCGCGCAGGAuGGcGUCg -3' miRNA: 3'- gCGGUGcGUGAGUGUGUCCUcUC-UAG- -5' |
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19851 | 5' | -54.9 | NC_004687.1 | + | 46296 | 0.67 | 0.890765 |
Target: 5'- cCGCCgucaAUGCGCUCGCGCAGcGGAugcugcagGGUCc -3' miRNA: 3'- -GCGG----UGCGUGAGUGUGUCcUCU--------CUAG- -5' |
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19851 | 5' | -54.9 | NC_004687.1 | + | 53189 | 0.67 | 0.91606 |
Target: 5'- aCGaCACGCACUCACACacgaaAGGcAGAccGAUg -3' miRNA: 3'- -GCgGUGCGUGAGUGUG-----UCC-UCU--CUAg -5' |
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19851 | 5' | -54.9 | NC_004687.1 | + | 54445 | 0.74 | 0.522949 |
Target: 5'- aGCCACGgGCUCAacauGCAGGAGGcccgcuauguGAUCa -3' miRNA: 3'- gCGGUGCgUGAGUg---UGUCCUCU----------CUAG- -5' |
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19851 | 5' | -54.9 | NC_004687.1 | + | 59967 | 0.67 | 0.897445 |
Target: 5'- gGCCACaGCACUCcCACc-GAG-GAUCg -3' miRNA: 3'- gCGGUG-CGUGAGuGUGucCUCuCUAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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