miRNA display CGI


Results 1 - 20 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19852 3' -59.6 NC_004687.1 + 117601 0.66 0.781378
Target:  5'- aGCUGGCCGGguucaccccggGCgagGCCGagcggcugcguaaggGCAUCGG-Ca -3'
miRNA:   3'- -CGACCGGCC-----------UGa--CGGUg--------------CGUAGCCuG- -5'
19852 3' -59.6 NC_004687.1 + 123444 0.66 0.780474
Target:  5'- cCUGGUCGGuACcgUGCCAgGgGUCguGGACg -3'
miRNA:   3'- cGACCGGCC-UG--ACGGUgCgUAG--CCUG- -5'
19852 3' -59.6 NC_004687.1 + 13741 0.66 0.779569
Target:  5'- --gGGcCCGGugcgcacgcucagGCUGcCCACGUugAUCGGACu -3'
miRNA:   3'- cgaCC-GGCC-------------UGAC-GGUGCG--UAGCCUG- -5'
19852 3' -59.6 NC_004687.1 + 110013 0.66 0.775027
Target:  5'- --cGGCacgugGGGCUGCUGCGCGgcuacacgcccaccCGGACg -3'
miRNA:   3'- cgaCCGg----CCUGACGGUGCGUa-------------GCCUG- -5'
19852 3' -59.6 NC_004687.1 + 134344 0.66 0.771371
Target:  5'- -gUGGaaCUGG-CUGCCGCGC-UgGGACg -3'
miRNA:   3'- cgACC--GGCCuGACGGUGCGuAgCCUG- -5'
19852 3' -59.6 NC_004687.1 + 77170 0.66 0.771371
Target:  5'- aGCUGGCCGGACcggUGgCACcccagaCAUaGGGCc -3'
miRNA:   3'- -CGACCGGCCUG---ACgGUGc-----GUAgCCUG- -5'
19852 3' -59.6 NC_004687.1 + 104836 0.66 0.771371
Target:  5'- uGCuUGGCCucGACaaugucgGCCACGUagucGUCGGAUg -3'
miRNA:   3'- -CG-ACCGGc-CUGa------CGGUGCG----UAGCCUG- -5'
19852 3' -59.6 NC_004687.1 + 45438 0.66 0.771371
Target:  5'- gGCgguacGCCGGAC-GCCAC-CGgugCGGGCa -3'
miRNA:   3'- -CGac---CGGCCUGaCGGUGcGUa--GCCUG- -5'
19852 3' -59.6 NC_004687.1 + 26423 0.66 0.771371
Target:  5'- cGCUGGggccauCUGGaccGCUGCCAgCGCAgucguaucCGGGCg -3'
miRNA:   3'- -CGACC------GGCC---UGACGGU-GCGUa-------GCCUG- -5'
19852 3' -59.6 NC_004687.1 + 90737 0.66 0.771371
Target:  5'- cGgUGGCCGGGCUGUaaAC-CAggGGACu -3'
miRNA:   3'- -CgACCGGCCUGACGg-UGcGUagCCUG- -5'
19852 3' -59.6 NC_004687.1 + 77673 0.66 0.771371
Target:  5'- --aGGCCGGACUcaacGCCcuggagaGCG-CGGGCg -3'
miRNA:   3'- cgaCCGGCCUGA----CGGug-----CGUaGCCUG- -5'
19852 3' -59.6 NC_004687.1 + 61493 0.66 0.770454
Target:  5'- cGCUGGCgGGggaaGCUGUCGCagaucucGCAgggcuggggCGGGCa -3'
miRNA:   3'- -CGACCGgCC----UGACGGUG-------CGUa--------GCCUG- -5'
19852 3' -59.6 NC_004687.1 + 142472 0.66 0.767696
Target:  5'- cGCgGGUgGGGaUGCCGCGCucgcgcaggaagCGGGCg -3'
miRNA:   3'- -CGaCCGgCCUgACGGUGCGua----------GCCUG- -5'
19852 3' -59.6 NC_004687.1 + 112324 0.66 0.762149
Target:  5'- cUUGGcCCGGACguccuuCCACGCGgccucgCGGAUc -3'
miRNA:   3'- cGACC-GGCCUGac----GGUGCGUa-----GCCUG- -5'
19852 3' -59.6 NC_004687.1 + 101729 0.66 0.762149
Target:  5'- cUUGGCCGaGAacuugGCCugGCAcagcUCGGGg -3'
miRNA:   3'- cGACCGGC-CUga---CGGugCGU----AGCCUg -5'
19852 3' -59.6 NC_004687.1 + 87726 0.66 0.762149
Target:  5'- cGCUGGCCGaugucGCUggGCC-CGCAgcuGGGCg -3'
miRNA:   3'- -CGACCGGCc----UGA--CGGuGCGUag-CCUG- -5'
19852 3' -59.6 NC_004687.1 + 79213 0.66 0.752817
Target:  5'- aGUUGauGUCGGGCUGUccggCACGgAUCGGAa -3'
miRNA:   3'- -CGAC--CGGCCUGACG----GUGCgUAGCCUg -5'
19852 3' -59.6 NC_004687.1 + 32017 0.66 0.752817
Target:  5'- uGCUGcGCagugacgcccCGGACUcGUCGUGCGUUGGGCg -3'
miRNA:   3'- -CGAC-CG----------GCCUGA-CGGUGCGUAGCCUG- -5'
19852 3' -59.6 NC_004687.1 + 36412 0.66 0.752817
Target:  5'- uCUGGCCGGACc-CgACGagGUCGGAg -3'
miRNA:   3'- cGACCGGCCUGacGgUGCg-UAGCCUg -5'
19852 3' -59.6 NC_004687.1 + 80514 0.66 0.743383
Target:  5'- cGCccgGGCgGcGGCUGCCGCGC--CGGuGCa -3'
miRNA:   3'- -CGa--CCGgC-CUGACGGUGCGuaGCC-UG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.