miRNA display CGI


Results 1 - 20 of 141 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19853 3' -62.3 NC_004687.1 + 66579 0.65 0.675207
Target:  5'- cGGCGCGAcuacgccgaucgguGGCGCGCGgUGCUGGa---- -3'
miRNA:   3'- -CCGCGCU--------------CCGCGUGC-AUGGCCgggug -5'
19853 3' -62.3 NC_004687.1 + 134321 0.66 0.668415
Target:  5'- cGGCGuCGAGGCGUACuuccaccagACCaGacCCCGCu -3'
miRNA:   3'- -CCGC-GCUCCGCGUGca-------UGGcC--GGGUG- -5'
19853 3' -62.3 NC_004687.1 + 106669 0.66 0.668415
Target:  5'- cGCGCGAGGCGagauugcuGCGUGCCauGUUgGCg -3'
miRNA:   3'- cCGCGCUCCGCg-------UGCAUGGc-CGGgUG- -5'
19853 3' -62.3 NC_004687.1 + 15875 0.66 0.668415
Target:  5'- cGGCGUGAucguGGCGCccaaGCGcGCCaaGGUUCGCg -3'
miRNA:   3'- -CCGCGCU----CCGCG----UGCaUGG--CCGGGUG- -5'
19853 3' -62.3 NC_004687.1 + 128132 0.66 0.668415
Target:  5'- cGGUGguCGAGcaGCGCGCGgGCUGGCUgCACu -3'
miRNA:   3'- -CCGC--GCUC--CGCGUGCaUGGCCGG-GUG- -5'
19853 3' -62.3 NC_004687.1 + 96293 0.66 0.667443
Target:  5'- uGGCGCGgguggccuuguugGGGCGCuucACGUaGCCGGUggCGCu -3'
miRNA:   3'- -CCGCGC-------------UCCGCG---UGCA-UGGCCGg-GUG- -5'
19853 3' -62.3 NC_004687.1 + 78593 0.66 0.667443
Target:  5'- cGCGCGAugaggauGCGCACGU-CCGGCgaguagaCCAg -3'
miRNA:   3'- cCGCGCUc------CGCGUGCAuGGCCG-------GGUg -5'
19853 3' -62.3 NC_004687.1 + 140441 0.66 0.666471
Target:  5'- cGGUGCuugcugguccacAGGCGCuugcCGUAcCCGGCCuCGCc -3'
miRNA:   3'- -CCGCGc-----------UCCGCGu---GCAU-GGCCGG-GUG- -5'
19853 3' -62.3 NC_004687.1 + 77221 0.66 0.664527
Target:  5'- gGGCGaaCGAGaGCGCuccgGCGguguugaacuuggGCUGGCCCAg -3'
miRNA:   3'- -CCGC--GCUC-CGCG----UGCa------------UGGCCGGGUg -5'
19853 3' -62.3 NC_004687.1 + 146560 0.66 0.658689
Target:  5'- cGUGCGAGGCaccaaCAuccUGU-CCGGCCCGg -3'
miRNA:   3'- cCGCGCUCCGc----GU---GCAuGGCCGGGUg -5'
19853 3' -62.3 NC_004687.1 + 71997 0.66 0.658689
Target:  5'- cGCGCGAGcCGCAUGUcgaccaGCaCGGCCa-- -3'
miRNA:   3'- cCGCGCUCcGCGUGCA------UG-GCCGGgug -5'
19853 3' -62.3 NC_004687.1 + 134984 0.66 0.658689
Target:  5'- cGCGCGAGGgGCAgGUAUCGacaUCgACg -3'
miRNA:   3'- cCGCGCUCCgCGUgCAUGGCc--GGgUG- -5'
19853 3' -62.3 NC_004687.1 + 18955 0.66 0.658689
Target:  5'- cGGCugccGUGcGGCGguCGggAUCGGCCCAg -3'
miRNA:   3'- -CCG----CGCuCCGCguGCa-UGGCCGGGUg -5'
19853 3' -62.3 NC_004687.1 + 72793 0.66 0.658689
Target:  5'- uGGCGaCGAGaUGCGCGUcgGCCuGUUCACg -3'
miRNA:   3'- -CCGC-GCUCcGCGUGCA--UGGcCGGGUG- -5'
19853 3' -62.3 NC_004687.1 + 31281 0.66 0.658689
Target:  5'- cGCGCGGccaucGCGCGCGaGCUGGgcaucaCCCACc -3'
miRNA:   3'- cCGCGCUc----CGCGUGCaUGGCC------GGGUG- -5'
19853 3' -62.3 NC_004687.1 + 142180 0.66 0.658689
Target:  5'- gGGCaGCcuGaGCGUGCGcACCGGgCCCACc -3'
miRNA:   3'- -CCG-CGcuC-CGCGUGCaUGGCC-GGGUG- -5'
19853 3' -62.3 NC_004687.1 + 100764 0.66 0.658689
Target:  5'- aGCGCuugccGAGcGCGuCGCGgaUACCGGCCUg- -3'
miRNA:   3'- cCGCG-----CUC-CGC-GUGC--AUGGCCGGGug -5'
19853 3' -62.3 NC_004687.1 + 69225 0.66 0.657715
Target:  5'- cGCGCGAcGGCGCcgaguagGCGauUGCCaGGUCgGCg -3'
miRNA:   3'- cCGCGCU-CCGCG-------UGC--AUGG-CCGGgUG- -5'
19853 3' -62.3 NC_004687.1 + 147853 0.66 0.648944
Target:  5'- gGGCaaGAGGCGCACcuucccgcACUGGCCgGg -3'
miRNA:   3'- -CCGcgCUCCGCGUGca------UGGCCGGgUg -5'
19853 3' -62.3 NC_004687.1 + 43591 0.66 0.648944
Target:  5'- -cCGCGAGGC-CGCGUGgaaggacguCCGGgCCAa -3'
miRNA:   3'- ccGCGCUCCGcGUGCAU---------GGCCgGGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.