miRNA display CGI


Results 1 - 20 of 141 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19853 3' -62.3 NC_004687.1 + 18782 0.69 0.459735
Target:  5'- aGGaCGaCGAGGuCGCcCGU-CUGGCCCAg -3'
miRNA:   3'- -CC-GC-GCUCC-GCGuGCAuGGCCGGGUg -5'
19853 3' -62.3 NC_004687.1 + 155311 0.71 0.367835
Target:  5'- aGGCGCGAaaaugauGGCGCugGUggcccugguGCUGaGCCUGCc -3'
miRNA:   3'- -CCGCGCU-------CCGCGugCA---------UGGC-CGGGUG- -5'
19853 3' -62.3 NC_004687.1 + 54268 0.71 0.368605
Target:  5'- uGGCGgGcaacaccGCGCugGUGCCG-CCCACg -3'
miRNA:   3'- -CCGCgCuc-----CGCGugCAUGGCcGGGUG- -5'
19853 3' -62.3 NC_004687.1 + 114975 0.71 0.384233
Target:  5'- -cCGCGAGGacgcggcaGCACGgcgcgACCuGCCCACg -3'
miRNA:   3'- ccGCGCUCCg-------CGUGCa----UGGcCGGGUG- -5'
19853 3' -62.3 NC_004687.1 + 41364 0.7 0.425175
Target:  5'- uGCGCGAGGuCGCACGca-UGGUCCu- -3'
miRNA:   3'- cCGCGCUCC-GCGUGCaugGCCGGGug -5'
19853 3' -62.3 NC_004687.1 + 50266 0.7 0.433671
Target:  5'- uGUGCGA-GCGCuuCGUGCCGGUucuggCCGCa -3'
miRNA:   3'- cCGCGCUcCGCGu-GCAUGGCCG-----GGUG- -5'
19853 3' -62.3 NC_004687.1 + 66090 0.7 0.433671
Target:  5'- cGCGaCGAGGUcgGCAaGUACCacuacgacaucGGCCCGCa -3'
miRNA:   3'- cCGC-GCUCCG--CGUgCAUGG-----------CCGGGUG- -5'
19853 3' -62.3 NC_004687.1 + 64895 0.69 0.450953
Target:  5'- cGCGCGuGGGCcucgGCGCGgcGCgGGCCCAg -3'
miRNA:   3'- cCGCGC-UCCG----CGUGCa-UGgCCGGGUg -5'
19853 3' -62.3 NC_004687.1 + 103241 0.69 0.450953
Target:  5'- aGgGCGAGGCGaccgGCG-ACCaGGUCCGCu -3'
miRNA:   3'- cCgCGCUCCGCg---UGCaUGG-CCGGGUG- -5'
19853 3' -62.3 NC_004687.1 + 131189 0.71 0.364002
Target:  5'- cGGCGCGgucgagccugccaacAaGCGCACGcUGCUGGCCCu- -3'
miRNA:   3'- -CCGCGC---------------UcCGCGUGC-AUGGCCGGGug -5'
19853 3' -62.3 NC_004687.1 + 116980 0.71 0.360955
Target:  5'- uGCGCGGGGUGgGCGUGcacCCGGCggGCg -3'
miRNA:   3'- cCGCGCUCCGCgUGCAU---GGCCGggUG- -5'
19853 3' -62.3 NC_004687.1 + 66722 0.72 0.337953
Target:  5'- cGCGCGGGGCuucuacaugccugGCAUGUACuCGGCgCAa -3'
miRNA:   3'- cCGCGCUCCG-------------CGUGCAUG-GCCGgGUg -5'
19853 3' -62.3 NC_004687.1 + 110909 0.78 0.135611
Target:  5'- uGGCGCGAGGCcUACGaGgccaccgagaucguCCGGCCCGCg -3'
miRNA:   3'- -CCGCGCUCCGcGUGCaU--------------GGCCGGGUG- -5'
19853 3' -62.3 NC_004687.1 + 5760 0.75 0.201166
Target:  5'- cGGUGUGAGGCGUGCugcccgACCGGCUCGa -3'
miRNA:   3'- -CCGCGCUCCGCGUGca----UGGCCGGGUg -5'
19853 3' -62.3 NC_004687.1 + 48445 0.74 0.253876
Target:  5'- uGCGCGuGGCguGCugGgcCCGGuCCCGCa -3'
miRNA:   3'- cCGCGCuCCG--CGugCauGGCC-GGGUG- -5'
19853 3' -62.3 NC_004687.1 + 75435 0.72 0.310556
Target:  5'- cGCGaCGAGuuCGCGCGUGCgGGCCgCGCu -3'
miRNA:   3'- cCGC-GCUCc-GCGUGCAUGgCCGG-GUG- -5'
19853 3' -62.3 NC_004687.1 + 91111 0.72 0.310556
Target:  5'- cGUGUG-GGU-CGCGUACCGGCCCGg -3'
miRNA:   3'- cCGCGCuCCGcGUGCAUGGCCGGGUg -5'
19853 3' -62.3 NC_004687.1 + 116883 0.72 0.313286
Target:  5'- uGGgGCGAGGUGCuccaggagaucggcgGCGaGCUGGCCC-Cg -3'
miRNA:   3'- -CCgCGCUCCGCG---------------UGCaUGGCCGGGuG- -5'
19853 3' -62.3 NC_004687.1 + 6186 0.72 0.323687
Target:  5'- gGGCGUGGGGUggguccuggucguGCGCGaccagAUCGGCCCGg -3'
miRNA:   3'- -CCGCGCUCCG-------------CGUGCa----UGGCCGGGUg -5'
19853 3' -62.3 NC_004687.1 + 34051 0.72 0.331477
Target:  5'- aGGCGCGAGG-GCACGaucCCGGuucCCUGCu -3'
miRNA:   3'- -CCGCGCUCCgCGUGCau-GGCC---GGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.