miRNA display CGI


Results 1 - 20 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19853 5' -55.3 NC_004687.1 + 88712 0.66 0.958375
Target:  5'- cGGGCGG--UGGUCGgGGGuCCagCCCu -3'
miRNA:   3'- -CCUGCCuaGCUAGUgUCCuGGagGGG- -5'
19853 5' -55.3 NC_004687.1 + 96680 0.66 0.958375
Target:  5'- aGGCGGA-CGAg-AUAGGugUUCaCCCg -3'
miRNA:   3'- cCUGCCUaGCUagUGUCCugGAG-GGG- -5'
19853 5' -55.3 NC_004687.1 + 80411 0.66 0.954644
Target:  5'- aGGACGGGaCGAcCugGGuACCcguagUCCCCc -3'
miRNA:   3'- -CCUGCCUaGCUaGugUCcUGG-----AGGGG- -5'
19853 5' -55.3 NC_004687.1 + 59471 0.66 0.954644
Target:  5'- cGGCGGAgc---CGCAGGggagACCUCCCa -3'
miRNA:   3'- cCUGCCUagcuaGUGUCC----UGGAGGGg -5'
19853 5' -55.3 NC_004687.1 + 42751 0.66 0.950693
Target:  5'- cGGCGGAcUCGAUCACcuucgAGGACCg---- -3'
miRNA:   3'- cCUGCCU-AGCUAGUG-----UCCUGGagggg -5'
19853 5' -55.3 NC_004687.1 + 49680 0.66 0.950693
Target:  5'- cGGA-GGcgCGGUC-CAGGGCagcgaUCUCCu -3'
miRNA:   3'- -CCUgCCuaGCUAGuGUCCUGg----AGGGG- -5'
19853 5' -55.3 NC_004687.1 + 58830 0.66 0.950693
Target:  5'- uGGGCGGugcCGGUCAacgaccuGGugCggaCCCCg -3'
miRNA:   3'- -CCUGCCua-GCUAGUgu-----CCugGa--GGGG- -5'
19853 5' -55.3 NC_004687.1 + 93492 0.66 0.950286
Target:  5'- cGGAUGGGUCcugcugggccuggGAcagcUCACGGuGACCUUCUg -3'
miRNA:   3'- -CCUGCCUAG-------------CU----AGUGUC-CUGGAGGGg -5'
19853 5' -55.3 NC_004687.1 + 38276 0.66 0.946519
Target:  5'- -aGCGGAUgcgCGAguUC-CAGGACCUgcagcgccgcuaCCCCg -3'
miRNA:   3'- ccUGCCUA---GCU--AGuGUCCUGGA------------GGGG- -5'
19853 5' -55.3 NC_004687.1 + 128222 0.66 0.946519
Target:  5'- cGACGaa--GGUCACcgucGGGACCUCUCUg -3'
miRNA:   3'- cCUGCcuagCUAGUG----UCCUGGAGGGG- -5'
19853 5' -55.3 NC_004687.1 + 148085 0.66 0.942118
Target:  5'- cGGAgcaGGAgucUGAUCACAGGugCcucauuucuUCCUCg -3'
miRNA:   3'- -CCUg--CCUa--GCUAGUGUCCugG---------AGGGG- -5'
19853 5' -55.3 NC_004687.1 + 68291 0.66 0.942118
Target:  5'- aGGACauGcgCGGUCGCGgcuGGACCUCgaCCg -3'
miRNA:   3'- -CCUGc-CuaGCUAGUGU---CCUGGAGg-GG- -5'
19853 5' -55.3 NC_004687.1 + 10820 0.66 0.93749
Target:  5'- -uGCGcAUCGA-CACccuGACCUCCCCg -3'
miRNA:   3'- ccUGCcUAGCUaGUGuc-CUGGAGGGG- -5'
19853 5' -55.3 NC_004687.1 + 43053 0.67 0.932631
Target:  5'- cGGACaccuGGcgUGGcUCGCAcccGGACCUgCCCg -3'
miRNA:   3'- -CCUG----CCuaGCU-AGUGU---CCUGGAgGGG- -5'
19853 5' -55.3 NC_004687.1 + 106546 0.67 0.932631
Target:  5'- cGGGCGGcgUGGUCGagaugaAGG-CCUCUUCc -3'
miRNA:   3'- -CCUGCCuaGCUAGUg-----UCCuGGAGGGG- -5'
19853 5' -55.3 NC_004687.1 + 141734 0.67 0.927541
Target:  5'- cGGCGGGUCGGcgUAcCAGGACg-CCUCg -3'
miRNA:   3'- cCUGCCUAGCUa-GU-GUCCUGgaGGGG- -5'
19853 5' -55.3 NC_004687.1 + 60847 0.67 0.927541
Target:  5'- --cUGGAUCGuggCGCAGGGCa-CCCUg -3'
miRNA:   3'- ccuGCCUAGCua-GUGUCCUGgaGGGG- -5'
19853 5' -55.3 NC_004687.1 + 150694 0.67 0.927541
Target:  5'- aGGGCGGG----UCACc-GACUUCCCCg -3'
miRNA:   3'- -CCUGCCUagcuAGUGucCUGGAGGGG- -5'
19853 5' -55.3 NC_004687.1 + 18153 0.67 0.927541
Target:  5'- -cACGG-UCGGUcCACuGGACguagguCUCCCCg -3'
miRNA:   3'- ccUGCCuAGCUA-GUGuCCUG------GAGGGG- -5'
19853 5' -55.3 NC_004687.1 + 89657 0.67 0.927019
Target:  5'- aGGACuGGAUCGAccUCgACGGcGCCUCgacggugCCCg -3'
miRNA:   3'- -CCUG-CCUAGCU--AG-UGUCcUGGAG-------GGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.