miRNA display CGI


Results 1 - 20 of 57 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19854 3' -54.7 NC_004687.1 + 125316 0.65 0.936587
Target:  5'- cUGCccgggGCCAGCaacucacGCAGCGCAUCGcuGGUc -3'
miRNA:   3'- -ACGca---UGGUCG-------CGUUGCGUAGU--CCAu -5'
19854 3' -54.7 NC_004687.1 + 75404 0.65 0.936587
Target:  5'- cUGC--ACCGGCGCGGCagccgccgcccggGCGUCGGuGUAg -3'
miRNA:   3'- -ACGcaUGGUCGCGUUG-------------CGUAGUC-CAU- -5'
19854 3' -54.7 NC_004687.1 + 151992 0.66 0.93148
Target:  5'- cGCGgGCgAGCGCGGCGCcgcgcuuGUCAGuGa- -3'
miRNA:   3'- aCGCaUGgUCGCGUUGCG-------UAGUC-Cau -5'
19854 3' -54.7 NC_004687.1 + 111157 0.66 0.926669
Target:  5'- gGCGcUG-CGGCGCGGCGCccGUCcGGUGa -3'
miRNA:   3'- aCGC-AUgGUCGCGUUGCG--UAGuCCAU- -5'
19854 3' -54.7 NC_004687.1 + 148041 0.66 0.926669
Target:  5'- gGCugaagGCCAGCGCGAUGCcgaaCAGGc- -3'
miRNA:   3'- aCGca---UGGUCGCGUUGCGua--GUCCau -5'
19854 3' -54.7 NC_004687.1 + 58667 0.66 0.921086
Target:  5'- aGCGUgGCC-GCGaCGACGuCGUCAaGGUGc -3'
miRNA:   3'- aCGCA-UGGuCGC-GUUGC-GUAGU-CCAU- -5'
19854 3' -54.7 NC_004687.1 + 123328 0.66 0.921086
Target:  5'- gGUGcGCUugguGCGCAGCaGCGUCGGGc- -3'
miRNA:   3'- aCGCaUGGu---CGCGUUG-CGUAGUCCau -5'
19854 3' -54.7 NC_004687.1 + 49243 0.66 0.921086
Target:  5'- aGUGUGCUuGCGCAG-GCGcCAGGUc -3'
miRNA:   3'- aCGCAUGGuCGCGUUgCGUaGUCCAu -5'
19854 3' -54.7 NC_004687.1 + 68749 0.66 0.920514
Target:  5'- aGCGUGCgGucguccucgcgcuGCGCGACGcCAUCAGcGg- -3'
miRNA:   3'- aCGCAUGgU-------------CGCGUUGC-GUAGUC-Cau -5'
19854 3' -54.7 NC_004687.1 + 16444 0.66 0.915252
Target:  5'- aGCGaGCuCAGCGcCGAUGCGUCGGc-- -3'
miRNA:   3'- aCGCaUG-GUCGC-GUUGCGUAGUCcau -5'
19854 3' -54.7 NC_004687.1 + 100406 0.66 0.915252
Target:  5'- uUGCGgugacgACCAGgGCuAGCGCcgUAGGc- -3'
miRNA:   3'- -ACGCa-----UGGUCgCG-UUGCGuaGUCCau -5'
19854 3' -54.7 NC_004687.1 + 82028 0.66 0.915252
Target:  5'- cGCacgGUACCGGCgguagcggugGCAGCGCGUCcGGc- -3'
miRNA:   3'- aCG---CAUGGUCG----------CGUUGCGUAGuCCau -5'
19854 3' -54.7 NC_004687.1 + 95515 0.66 0.913453
Target:  5'- cUGCGUGCCGGUGUGGuuggcacgcgagauCGCGUUguuguaggAGGUAu -3'
miRNA:   3'- -ACGCAUGGUCGCGUU--------------GCGUAG--------UCCAU- -5'
19854 3' -54.7 NC_004687.1 + 3571 0.66 0.909169
Target:  5'- gGCGUGCUGGUGCAgaccAUGCA-CGuGGUGg -3'
miRNA:   3'- aCGCAUGGUCGCGU----UGCGUaGU-CCAU- -5'
19854 3' -54.7 NC_004687.1 + 21274 0.66 0.909169
Target:  5'- gGCGUACCAcuCGCGACGUucggCAccGGUGa -3'
miRNA:   3'- aCGCAUGGUc-GCGUUGCGua--GU--CCAU- -5'
19854 3' -54.7 NC_004687.1 + 97459 0.66 0.907296
Target:  5'- --gGU-CCGGCGUGACGCugaaaucgccaaguGUCAGGUAc -3'
miRNA:   3'- acgCAuGGUCGCGUUGCG--------------UAGUCCAU- -5'
19854 3' -54.7 NC_004687.1 + 66446 0.66 0.907296
Target:  5'- aGCGUugagcucuucGCCGGgcucuaccgacaguCGCGACGaCAUCAGGg- -3'
miRNA:   3'- aCGCA----------UGGUC--------------GCGUUGC-GUAGUCCau -5'
19854 3' -54.7 NC_004687.1 + 135207 0.67 0.902839
Target:  5'- gUGCGcGCuCGGCGCGAuCGCGUUcccGGUGc -3'
miRNA:   3'- -ACGCaUG-GUCGCGUU-GCGUAGu--CCAU- -5'
19854 3' -54.7 NC_004687.1 + 134885 0.67 0.902839
Target:  5'- gGCGagaaACCGGCGCAGCGCGgccucGUAg -3'
miRNA:   3'- aCGCa---UGGUCGCGUUGCGUaguc-CAU- -5'
19854 3' -54.7 NC_004687.1 + 4574 0.67 0.902839
Target:  5'- aGCGagGCguGCgGCGGCGCAccUCGGGg- -3'
miRNA:   3'- aCGCa-UGguCG-CGUUGCGU--AGUCCau -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.