miRNA display CGI


Results 1 - 20 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19854 5' -63.8 NC_004687.1 + 31750 0.65 0.592671
Target:  5'- cGCgGCCUGaGCGGacGCCuggacguugaagugGCGCuguuUGUGGUu -3'
miRNA:   3'- -CGgCGGAC-CGCCa-CGG--------------CGCG----ACACCG- -5'
19854 5' -63.8 NC_004687.1 + 21488 0.66 0.585918
Target:  5'- aGCuCGuCCUGGaGGUGCuCGCcgcccgcacccgGCUG-GGCg -3'
miRNA:   3'- -CG-GC-GGACCgCCACG-GCG------------CGACaCCG- -5'
19854 5' -63.8 NC_004687.1 + 16685 0.66 0.585918
Target:  5'- gGUCGCUca-CGGa-CUGCGCUGUGGCg -3'
miRNA:   3'- -CGGCGGaccGCCacGGCGCGACACCG- -5'
19854 5' -63.8 NC_004687.1 + 3151 0.66 0.585918
Target:  5'- gGCCGaCCUGcaGCGGcacCCGguCGCUGuUGGCa -3'
miRNA:   3'- -CGGC-GGAC--CGCCac-GGC--GCGAC-ACCG- -5'
19854 5' -63.8 NC_004687.1 + 46013 0.66 0.585918
Target:  5'- aGUCGCa-GGCGGUcuuggcgccGCCGCGCgcgaUGUaGGUc -3'
miRNA:   3'- -CGGCGgaCCGCCA---------CGGCGCG----ACA-CCG- -5'
19854 5' -63.8 NC_004687.1 + 50972 0.66 0.576298
Target:  5'- cGCCucgaCCUGGCGGcGaCCG-GCgGUGGUc -3'
miRNA:   3'- -CGGc---GGACCGCCaC-GGCgCGaCACCG- -5'
19854 5' -63.8 NC_004687.1 + 28930 0.66 0.576298
Target:  5'- cCCGCaagagGGCGG-GaCCGCGCcaagGGCg -3'
miRNA:   3'- cGGCGga---CCGCCaC-GGCGCGaca-CCG- -5'
19854 5' -63.8 NC_004687.1 + 144651 0.66 0.576298
Target:  5'- aUCGCCUGGCac-GCCGgGCaG-GGCa -3'
miRNA:   3'- cGGCGGACCGccaCGGCgCGaCaCCG- -5'
19854 5' -63.8 NC_004687.1 + 88635 0.66 0.576298
Target:  5'- cGUCgGCCUcGGUGGccgagGCgaucgaCGCGCUGUGGg -3'
miRNA:   3'- -CGG-CGGA-CCGCCa----CG------GCGCGACACCg -5'
19854 5' -63.8 NC_004687.1 + 65237 0.66 0.576298
Target:  5'- cGCCGCCaccacuaccaacUGG-GGUgagGCCaaGCGCUGcuggGGCa -3'
miRNA:   3'- -CGGCGG------------ACCgCCA---CGG--CGCGACa---CCG- -5'
19854 5' -63.8 NC_004687.1 + 106904 0.66 0.575338
Target:  5'- gGCgGCaugGGUGGcGCCggggcggGCGCggGUGGCg -3'
miRNA:   3'- -CGgCGga-CCGCCaCGG-------CGCGa-CACCG- -5'
19854 5' -63.8 NC_004687.1 + 39475 0.66 0.575338
Target:  5'- cGCCggugaugGCCUGGUgauaGGUGCCguuGCGCgc-GGCc -3'
miRNA:   3'- -CGG-------CGGACCG----CCACGG---CGCGacaCCG- -5'
19854 5' -63.8 NC_004687.1 + 6732 0.66 0.566713
Target:  5'- gGCCGCaCgcaccucgucGGUGGUcaugcggcGCgGgGCUGUGGCc -3'
miRNA:   3'- -CGGCG-Ga---------CCGCCA--------CGgCgCGACACCG- -5'
19854 5' -63.8 NC_004687.1 + 120888 0.66 0.566713
Target:  5'- gGCUGCCggGGCuGcUGCCGCcGCUGcgucacccUGGUc -3'
miRNA:   3'- -CGGCGGa-CCGcC-ACGGCG-CGAC--------ACCG- -5'
19854 5' -63.8 NC_004687.1 + 43168 0.66 0.566713
Target:  5'- uGCUGCCggagcggguggGGCGGggGCCG-GuCUG-GGCg -3'
miRNA:   3'- -CGGCGGa----------CCGCCa-CGGCgC-GACaCCG- -5'
19854 5' -63.8 NC_004687.1 + 152558 0.66 0.566713
Target:  5'- cGCCGUUcgcgGGCaaGGUGauGCGCgagGUGGUg -3'
miRNA:   3'- -CGGCGGa---CCG--CCACggCGCGa--CACCG- -5'
19854 5' -63.8 NC_004687.1 + 73933 0.66 0.560982
Target:  5'- cGCgGCCaGGCGGUGaacccggcgauCCucggcauggucggcgGCGCgGUGGCc -3'
miRNA:   3'- -CGgCGGaCCGCCAC-----------GG---------------CGCGaCACCG- -5'
19854 5' -63.8 NC_004687.1 + 149496 0.66 0.558122
Target:  5'- cGCCGUCgGGCucguaguguucgacaGUGCCGCcCagGUGGCg -3'
miRNA:   3'- -CGGCGGaCCGc--------------CACGGCGcGa-CACCG- -5'
19854 5' -63.8 NC_004687.1 + 87037 0.66 0.551466
Target:  5'- uGCCGCugagcaucuccgagCUGuccauggacauccuGCGGaUGCCGUGC-GUGGCc -3'
miRNA:   3'- -CGGCG--------------GAC--------------CGCC-ACGGCGCGaCACCG- -5'
19854 5' -63.8 NC_004687.1 + 136708 0.66 0.551466
Target:  5'- -gCGUCUGGCGGaccaggUcaccaccucgucgagGCCGUGCUGcugGGCg -3'
miRNA:   3'- cgGCGGACCGCC------A---------------CGGCGCGACa--CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.