miRNA display CGI


Results 21 - 40 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19854 5' -63.8 NC_004687.1 + 105537 0.66 0.542
Target:  5'- uGCCGCCaccacugcgcguccGGCGGU---GCGCUGUGcGCc -3'
miRNA:   3'- -CGGCGGa-------------CCGCCAcggCGCGACAC-CG- -5'
19854 5' -63.8 NC_004687.1 + 71886 0.66 0.538228
Target:  5'- -aCGCCaucGGCa-UGCCGCGCaUGUGGg -3'
miRNA:   3'- cgGCGGa--CCGccACGGCGCG-ACACCg -5'
19854 5' -63.8 NC_004687.1 + 142789 0.66 0.538228
Target:  5'- aGCgGCCaGuGCGGcUGCCaaccCGCUGcGGCa -3'
miRNA:   3'- -CGgCGGaC-CGCC-ACGGc---GCGACaCCG- -5'
19854 5' -63.8 NC_004687.1 + 140528 0.66 0.535406
Target:  5'- aCCGCCgGuGCGGUGCCcaacuucaccgccaGC-CUG-GGCg -3'
miRNA:   3'- cGGCGGaC-CGCCACGG--------------CGcGACaCCG- -5'
19854 5' -63.8 NC_004687.1 + 133918 0.67 0.52884
Target:  5'- cGCgGC--GGCGG-GaCCGCGCUGUcGCa -3'
miRNA:   3'- -CGgCGgaCCGCCaC-GGCGCGACAcCG- -5'
19854 5' -63.8 NC_004687.1 + 73993 0.67 0.52884
Target:  5'- aCCgGCCagGGCGGUaucgGUgGCGUcgGUGGCg -3'
miRNA:   3'- cGG-CGGa-CCGCCA----CGgCGCGa-CACCG- -5'
19854 5' -63.8 NC_004687.1 + 9428 0.67 0.52884
Target:  5'- gGCCGggUGGCGGUGUacagauCGCcCUGgugGGCg -3'
miRNA:   3'- -CGGCggACCGCCACG------GCGcGACa--CCG- -5'
19854 5' -63.8 NC_004687.1 + 138947 0.67 0.52884
Target:  5'- cGCCaGCCUGGaGG-GCCGCGUcgaggaccUGgagcucGGCg -3'
miRNA:   3'- -CGG-CGGACCgCCaCGGCGCG--------ACa-----CCG- -5'
19854 5' -63.8 NC_004687.1 + 57923 0.67 0.51025
Target:  5'- aUCGCCaUGGCGGUGa-GCGUcuUGGUg -3'
miRNA:   3'- cGGCGG-ACCGCCACggCGCGacACCG- -5'
19854 5' -63.8 NC_004687.1 + 137794 0.67 0.504726
Target:  5'- gGUCGUgCUGGCGGcgugGCCGCGCUcaacagcuccggucaGgUGGUc -3'
miRNA:   3'- -CGGCG-GACCGCCa---CGGCGCGA---------------C-ACCG- -5'
19854 5' -63.8 NC_004687.1 + 77296 0.67 0.501058
Target:  5'- uGCCGUUggUGGuCGGgaugGCCGgaauCGCgGUGGCu -3'
miRNA:   3'- -CGGCGG--ACC-GCCa---CGGC----GCGaCACCG- -5'
19854 5' -63.8 NC_004687.1 + 880 0.67 0.501058
Target:  5'- uCCGCUgGGCcaGGUGCUGCGUgagaacGUGGg -3'
miRNA:   3'- cGGCGGaCCG--CCACGGCGCGa-----CACCg -5'
19854 5' -63.8 NC_004687.1 + 130691 0.67 0.500143
Target:  5'- gGgUGaCUGGCGaGcaUGCCGCGCUGUucaacugGGCg -3'
miRNA:   3'- -CgGCgGACCGC-C--ACGGCGCGACA-------CCG- -5'
19854 5' -63.8 NC_004687.1 + 19900 0.67 0.491939
Target:  5'- aGCUGuaCCUGGCGG-GCgagGUGCagaUGUGGCu -3'
miRNA:   3'- -CGGC--GGACCGCCaCGg--CGCG---ACACCG- -5'
19854 5' -63.8 NC_004687.1 + 45814 0.67 0.491939
Target:  5'- aGUCGUCggcgGGCGGcgGCauccaGCGCgccggacGUGGCg -3'
miRNA:   3'- -CGGCGGa---CCGCCa-CGg----CGCGa------CACCG- -5'
19854 5' -63.8 NC_004687.1 + 65797 0.67 0.482898
Target:  5'- cCCGCCgGGCuuccgucccGGUGaCGCGCUGcgcgcaGGCg -3'
miRNA:   3'- cGGCGGaCCG---------CCACgGCGCGACa-----CCG- -5'
19854 5' -63.8 NC_004687.1 + 121632 0.67 0.482898
Target:  5'- cGCC-CCUGGCGG-GCCGaCGUcaaGGUg -3'
miRNA:   3'- -CGGcGGACCGCCaCGGC-GCGacaCCG- -5'
19854 5' -63.8 NC_004687.1 + 74112 0.67 0.482898
Target:  5'- aGCCGUaguaggugaaGGCGGUGCCGC-C-GUcGGCa -3'
miRNA:   3'- -CGGCGga--------CCGCCACGGCGcGaCA-CCG- -5'
19854 5' -63.8 NC_004687.1 + 110711 0.67 0.481099
Target:  5'- gGCCuGUCuuguuggucucggUGGUGGUcugcgccGCCGCGUUGUcGGCg -3'
miRNA:   3'- -CGG-CGG-------------ACCGCCA-------CGGCGCGACA-CCG- -5'
19854 5' -63.8 NC_004687.1 + 120548 0.68 0.473937
Target:  5'- cGCCGCgCgUGGCuGGccUGCUGCugcagGCUGuUGGCg -3'
miRNA:   3'- -CGGCG-G-ACCG-CC--ACGGCG-----CGAC-ACCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.