miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19855 3' -55.6 NC_004687.1 + 134293 0.66 0.930596
Target:  5'- gGUCGGUgAGCccgaccaggauGGCGUGCGGCGUcgaggcguacuUCCa- -3'
miRNA:   3'- -CAGCCG-UCG-----------CUGCAUGUCGCA-----------AGGac -5'
19855 3' -55.6 NC_004687.1 + 73137 0.66 0.930596
Target:  5'- cUCGGCGaCGGCGUcgACGaucuuGCGUUCCg- -3'
miRNA:   3'- cAGCCGUcGCUGCA--UGU-----CGCAAGGac -5'
19855 3' -55.6 NC_004687.1 + 117455 0.66 0.930596
Target:  5'- aUCGGCcaccgcguccugGGCGGCGUugAGCGacUCUUc -3'
miRNA:   3'- cAGCCG------------UCGCUGCAugUCGCa-AGGAc -5'
19855 3' -55.6 NC_004687.1 + 51229 0.66 0.92531
Target:  5'- -gCGGCGGCGAUGUcgguCAGCG--CCg- -3'
miRNA:   3'- caGCCGUCGCUGCAu---GUCGCaaGGac -5'
19855 3' -55.6 NC_004687.1 + 13419 0.66 0.920347
Target:  5'- aUCGGCGGCGuccacCGccgccuuggaggcccGCAGCGcgUCCUGa -3'
miRNA:   3'- cAGCCGUCGCu----GCa--------------UGUCGCa-AGGAC- -5'
19855 3' -55.6 NC_004687.1 + 77066 0.66 0.919783
Target:  5'- gGUCGGCGGaauCGugGUGCAG-GUggCCa- -3'
miRNA:   3'- -CAGCCGUC---GCugCAUGUCgCAa-GGac -5'
19855 3' -55.6 NC_004687.1 + 34270 0.66 0.919783
Target:  5'- uGUCGGCAGUGcACGa--AGCGcgCCa- -3'
miRNA:   3'- -CAGCCGUCGC-UGCaugUCGCaaGGac -5'
19855 3' -55.6 NC_004687.1 + 97355 0.66 0.919783
Target:  5'- cGUCGGCGGgG-UGUugGGCGgaCCc- -3'
miRNA:   3'- -CAGCCGUCgCuGCAugUCGCaaGGac -5'
19855 3' -55.6 NC_004687.1 + 127884 0.66 0.916353
Target:  5'- cUCGGCGGCacggcacaccugaugGuCGUACGGCGUcggacagagUCCUu -3'
miRNA:   3'- cAGCCGUCG---------------CuGCAUGUCGCA---------AGGAc -5'
19855 3' -55.6 NC_004687.1 + 60939 0.66 0.914017
Target:  5'- cGUCGGCguGGCcccGACGgcCAGCGcgCCg- -3'
miRNA:   3'- -CAGCCG--UCG---CUGCauGUCGCaaGGac -5'
19855 3' -55.6 NC_004687.1 + 83790 0.66 0.912241
Target:  5'- cGUCGGCGaccaaccgguucauGCGGCuggGCAGCGUgCCg- -3'
miRNA:   3'- -CAGCCGU--------------CGCUGca-UGUCGCAaGGac -5'
19855 3' -55.6 NC_004687.1 + 81645 0.66 0.908013
Target:  5'- -gCGGCGGCGGCGgugguggagGCGGCGgugCUc- -3'
miRNA:   3'- caGCCGUCGCUGCa--------UGUCGCaa-GGac -5'
19855 3' -55.6 NC_004687.1 + 52890 0.66 0.901771
Target:  5'- uUCGGCAcGUccaaGAUGUcgagGCGGCGgUCCUGg -3'
miRNA:   3'- cAGCCGU-CG----CUGCA----UGUCGCaAGGAC- -5'
19855 3' -55.6 NC_004687.1 + 1897 0.66 0.901771
Target:  5'- aGUCGcuGCAguGCGACGUgauACGGCGUgaccaccuuggCCUGg -3'
miRNA:   3'- -CAGC--CGU--CGCUGCA---UGUCGCAa----------GGAC- -5'
19855 3' -55.6 NC_004687.1 + 4274 0.66 0.899853
Target:  5'- -cCGGCGGCG-UGUGCAGCauuuugagcgccuuGgccUCCUGg -3'
miRNA:   3'- caGCCGUCGCuGCAUGUCG--------------Ca--AGGAC- -5'
19855 3' -55.6 NC_004687.1 + 49677 0.67 0.895295
Target:  5'- cGUCGGaGGCG-CGguccaggGCAGCGaucUCCUGa -3'
miRNA:   3'- -CAGCCgUCGCuGCa------UGUCGCa--AGGAC- -5'
19855 3' -55.6 NC_004687.1 + 12660 0.67 0.888589
Target:  5'- -cCGGC-GUGGCGUACuGGCugUCCUGg -3'
miRNA:   3'- caGCCGuCGCUGCAUG-UCGcaAGGAC- -5'
19855 3' -55.6 NC_004687.1 + 22425 0.67 0.888589
Target:  5'- cGUCgGGCAGCaGCG-ACAGCcUUCCg- -3'
miRNA:   3'- -CAG-CCGUCGcUGCaUGUCGcAAGGac -5'
19855 3' -55.6 NC_004687.1 + 63851 0.67 0.881655
Target:  5'- gGUUGGCGGUGGCGUucAUGGUcucUCCUGu -3'
miRNA:   3'- -CAGCCGUCGCUGCA--UGUCGca-AGGAC- -5'
19855 3' -55.6 NC_004687.1 + 82037 0.67 0.874498
Target:  5'- -cCGGCGGUaGCGgugGCAGCGcgUCCg- -3'
miRNA:   3'- caGCCGUCGcUGCa--UGUCGCa-AGGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.