miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19855 3' -55.6 NC_004687.1 + 144095 0.8 0.231519
Target:  5'- gGUCGGCAGCGACGccaACAGCGUcggcgucuUCCa- -3'
miRNA:   3'- -CAGCCGUCGCUGCa--UGUCGCA--------AGGac -5'
19855 3' -55.6 NC_004687.1 + 34270 0.66 0.919783
Target:  5'- uGUCGGCAGUGcACGa--AGCGcgCCa- -3'
miRNA:   3'- -CAGCCGUCGC-UGCaugUCGCaaGGac -5'
19855 3' -55.6 NC_004687.1 + 60939 0.66 0.914017
Target:  5'- cGUCGGCguGGCcccGACGgcCAGCGcgCCg- -3'
miRNA:   3'- -CAGCCG--UCG---CUGCauGUCGCaaGGac -5'
19855 3' -55.6 NC_004687.1 + 83790 0.66 0.912241
Target:  5'- cGUCGGCGaccaaccgguucauGCGGCuggGCAGCGUgCCg- -3'
miRNA:   3'- -CAGCCGU--------------CGCUGca-UGUCGCAaGGac -5'
19855 3' -55.6 NC_004687.1 + 81645 0.66 0.908013
Target:  5'- -gCGGCGGCGGCGgugguggagGCGGCGgugCUc- -3'
miRNA:   3'- caGCCGUCGCUGCa--------UGUCGCaa-GGac -5'
19855 3' -55.6 NC_004687.1 + 82037 0.67 0.874498
Target:  5'- -cCGGCGGUaGCGgugGCAGCGcgUCCg- -3'
miRNA:   3'- caGCCGUCGcUGCa--UGUCGCa-AGGac -5'
19855 3' -55.6 NC_004687.1 + 45962 0.68 0.843748
Target:  5'- -aCGGCGGCGAgcuucgacgaccCGUACGaCGcUCCUGa -3'
miRNA:   3'- caGCCGUCGCU------------GCAUGUcGCaAGGAC- -5'
19855 3' -55.6 NC_004687.1 + 100442 0.68 0.818635
Target:  5'- aUCGGCGGCGACGaAUGGUacauGgcCCUGg -3'
miRNA:   3'- cAGCCGUCGCUGCaUGUCG----CaaGGAC- -5'
19855 3' -55.6 NC_004687.1 + 19597 0.69 0.791991
Target:  5'- aGUCGGUGGCcgagGACaucGCGGCGggCCUGg -3'
miRNA:   3'- -CAGCCGUCG----CUGca-UGUCGCaaGGAC- -5'
19855 3' -55.6 NC_004687.1 + 45071 0.74 0.522545
Target:  5'- cUCGGCAGCGACGccggGCGGCGgagcagaugCCa- -3'
miRNA:   3'- cAGCCGUCGCUGCa---UGUCGCaa-------GGac -5'
19855 3' -55.6 NC_004687.1 + 12819 0.73 0.552386
Target:  5'- aUCGGCGGCGAC-UACAGCaaggUCCg- -3'
miRNA:   3'- cAGCCGUCGCUGcAUGUCGca--AGGac -5'
19855 3' -55.6 NC_004687.1 + 45817 0.71 0.674844
Target:  5'- cGUCGGCgGGCGGCGgcaucCAGCGcgCCg- -3'
miRNA:   3'- -CAGCCG-UCGCUGCau---GUCGCaaGGac -5'
19855 3' -55.6 NC_004687.1 + 78265 0.71 0.674844
Target:  5'- aUUGGCAGCGACcaugacucgGUcggccuguuccaGCAGCGUccgUCCUGg -3'
miRNA:   3'- cAGCCGUCGCUG---------CA------------UGUCGCA---AGGAC- -5'
19855 3' -55.6 NC_004687.1 + 7160 0.7 0.715233
Target:  5'- -aUGGCAGCGGCG-ACuGCGUgUCCa- -3'
miRNA:   3'- caGCCGUCGCUGCaUGuCGCA-AGGac -5'
19855 3' -55.6 NC_004687.1 + 140041 0.69 0.764043
Target:  5'- cUCGGCAGcCGACGU-CGGUGcccggUCCUc -3'
miRNA:   3'- cAGCCGUC-GCUGCAuGUCGCa----AGGAc -5'
19855 3' -55.6 NC_004687.1 + 62209 1.07 0.004231
Target:  5'- uGUCGGCAGCGACGUACAGCGUUCCUGc -3'
miRNA:   3'- -CAGCCGUCGCUGCAUGUCGCAAGGAC- -5'
19855 3' -55.6 NC_004687.1 + 73137 0.66 0.930596
Target:  5'- cUCGGCGaCGGCGUcgACGaucuuGCGUUCCg- -3'
miRNA:   3'- cAGCCGUcGCUGCA--UGU-----CGCAAGGac -5'
19855 3' -55.6 NC_004687.1 + 134293 0.66 0.930596
Target:  5'- gGUCGGUgAGCccgaccaggauGGCGUGCGGCGUcgaggcguacuUCCa- -3'
miRNA:   3'- -CAGCCG-UCG-----------CUGCAUGUCGCA-----------AGGac -5'
19855 3' -55.6 NC_004687.1 + 51229 0.66 0.92531
Target:  5'- -gCGGCGGCGAUGUcgguCAGCG--CCg- -3'
miRNA:   3'- caGCCGUCGCUGCAu---GUCGCaaGGac -5'
19855 3' -55.6 NC_004687.1 + 13419 0.66 0.920347
Target:  5'- aUCGGCGGCGuccacCGccgccuuggaggcccGCAGCGcgUCCUGa -3'
miRNA:   3'- cAGCCGUCGCu----GCa--------------UGUCGCa-AGGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.