miRNA display CGI


Results 1 - 20 of 132 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19855 5' -52.6 NC_004687.1 + 17423 0.66 0.986311
Target:  5'- gGCCuuggcGGAcaGCGAGGAgAUGagcccggUGAUGUCg -3'
miRNA:   3'- -CGGu----CCU--UGCUCCUgUACa------GCUACGG- -5'
19855 5' -52.6 NC_004687.1 + 90145 0.66 0.986311
Target:  5'- cGgCGGGAucugaaccugcaGCG-GGACGUuGagGAUGCCg -3'
miRNA:   3'- -CgGUCCU------------UGCuCCUGUA-CagCUACGG- -5'
19855 5' -52.6 NC_004687.1 + 11349 0.66 0.986311
Target:  5'- gGCCAGGcccaGACuGGGGuGCugagCGAUGCCc -3'
miRNA:   3'- -CGGUCC----UUG-CUCC-UGuacaGCUACGG- -5'
19855 5' -52.6 NC_004687.1 + 1461 0.66 0.986311
Target:  5'- cGUCAGGGccagcgcguucuGCGGGGugGUcGUCGA--CCa -3'
miRNA:   3'- -CGGUCCU------------UGCUCCugUA-CAGCUacGG- -5'
19855 5' -52.6 NC_004687.1 + 59766 0.66 0.986311
Target:  5'- cGCgCAGGAcUGAGGugGUGgcuugCGcagaGCCg -3'
miRNA:   3'- -CG-GUCCUuGCUCCugUACa----GCua--CGG- -5'
19855 5' -52.6 NC_004687.1 + 4043 0.66 0.986311
Target:  5'- cCCAgacgguauGGAACcAGGGCGUGUgGG-GCCa -3'
miRNA:   3'- cGGU--------CCUUGcUCCUGUACAgCUaCGG- -5'
19855 5' -52.6 NC_004687.1 + 104061 0.66 0.986311
Target:  5'- cGCCgAGGAACucGGGCuccgggGUcagguagaCGGUGCCa -3'
miRNA:   3'- -CGG-UCCUUGcuCCUGua----CA--------GCUACGG- -5'
19855 5' -52.6 NC_004687.1 + 131280 0.66 0.986311
Target:  5'- uGCCGGGAggccucgggcGCGuuGGcCAUGgucaUCGcgGCCa -3'
miRNA:   3'- -CGGUCCU----------UGCu-CCuGUAC----AGCuaCGG- -5'
19855 5' -52.6 NC_004687.1 + 71514 0.66 0.986311
Target:  5'- cGCCAGGucGCGcuGGGCGagGUCaccUGCCg -3'
miRNA:   3'- -CGGUCCu-UGCu-CCUGUa-CAGcu-ACGG- -5'
19855 5' -52.6 NC_004687.1 + 135683 0.66 0.986311
Target:  5'- gGCCAuggguacuagacGGAuCGAGGACu--UCGgcGCCg -3'
miRNA:   3'- -CGGU------------CCUuGCUCCUGuacAGCuaCGG- -5'
19855 5' -52.6 NC_004687.1 + 47207 0.66 0.98529
Target:  5'- uGCgCGGGGugGucGACAUcuggaugcacuugucGUCGAaGCCg -3'
miRNA:   3'- -CG-GUCCUugCucCUGUA---------------CAGCUaCGG- -5'
19855 5' -52.6 NC_004687.1 + 151305 0.66 0.984578
Target:  5'- cGCCAGGAcacCGAGGAC----CGcugGCCa -3'
miRNA:   3'- -CGGUCCUu--GCUCCUGuacaGCua-CGG- -5'
19855 5' -52.6 NC_004687.1 + 75021 0.66 0.984578
Target:  5'- gGCCu-GAAgGAGGcCGgauUCGAUGCCg -3'
miRNA:   3'- -CGGucCUUgCUCCuGUac-AGCUACGG- -5'
19855 5' -52.6 NC_004687.1 + 34044 0.66 0.984578
Target:  5'- gGCCuGGAggcGCGAGGGCA---CGAUcCCg -3'
miRNA:   3'- -CGGuCCU---UGCUCCUGUacaGCUAcGG- -5'
19855 5' -52.6 NC_004687.1 + 39204 0.66 0.982684
Target:  5'- uGCCGGGGccGCGAGugg--GUCcgGGUGCCg -3'
miRNA:   3'- -CGGUCCU--UGCUCcuguaCAG--CUACGG- -5'
19855 5' -52.6 NC_004687.1 + 118550 0.66 0.982684
Target:  5'- uCCAGcGAGac-GGACAUGUCGAcgacuucGCCg -3'
miRNA:   3'- cGGUC-CUUgcuCCUGUACAGCUa------CGG- -5'
19855 5' -52.6 NC_004687.1 + 144130 0.66 0.982684
Target:  5'- cGCUguaGGGGGCGGuggcGGuCAUGUCGA-GCUc -3'
miRNA:   3'- -CGG---UCCUUGCU----CCuGUACAGCUaCGG- -5'
19855 5' -52.6 NC_004687.1 + 148178 0.66 0.982684
Target:  5'- cGCUGGGcAGCGAGGcauaGCGgcccugGUUGAUGUg -3'
miRNA:   3'- -CGGUCC-UUGCUCC----UGUa-----CAGCUACGg -5'
19855 5' -52.6 NC_004687.1 + 134424 0.66 0.982684
Target:  5'- aGCCGGGugcgGGCGgcgagcaccuccAGGACGagcuccuggGUCGGUGUCa -3'
miRNA:   3'- -CGGUCC----UUGC------------UCCUGUa--------CAGCUACGG- -5'
19855 5' -52.6 NC_004687.1 + 142499 0.66 0.982684
Target:  5'- gGCCuccaAGGcGGCGGuGGACGccGcCGAUGCCg -3'
miRNA:   3'- -CGG----UCC-UUGCU-CCUGUa-CaGCUACGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.