miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19858 3' -55.6 NC_004687.1 + 116482 0.66 0.928894
Target:  5'- cCCGGAGgcGGaccggcaGCGCCCggggGCAGCAucGg -3'
miRNA:   3'- -GGUCUCauCUc------CGCGGG----CGUCGUuuC- -5'
19858 3' -55.6 NC_004687.1 + 152999 0.66 0.928894
Target:  5'- aCCAGGGcccAGAccgggaagaacgGGCGCCaguCGCGGCGAc- -3'
miRNA:   3'- -GGUCUCa--UCU------------CCGCGG---GCGUCGUUuc -5'
19858 3' -55.6 NC_004687.1 + 36531 0.66 0.928894
Target:  5'- cCCuGGGUGG-GGCaccuGgCCGCAGCAu-- -3'
miRNA:   3'- -GGuCUCAUCuCCG----CgGGCGUCGUuuc -5'
19858 3' -55.6 NC_004687.1 + 90689 0.66 0.928894
Target:  5'- cCCAGuuGGUAGuGGUGgCgGCGGCGcAGu -3'
miRNA:   3'- -GGUC--UCAUCuCCGCgGgCGUCGUuUC- -5'
19858 3' -55.6 NC_004687.1 + 30309 0.66 0.928894
Target:  5'- cCCAGcucaAGgacgAGAucGGCGCcauCCGCAGCGAGc -3'
miRNA:   3'- -GGUC----UCa---UCU--CCGCG---GGCGUCGUUUc -5'
19858 3' -55.6 NC_004687.1 + 96903 0.66 0.928894
Target:  5'- -aAGAGUccccGGGGGUGuCCUGCcgggguguagcgGGCAGAGg -3'
miRNA:   3'- ggUCUCA----UCUCCGC-GGGCG------------UCGUUUC- -5'
19858 3' -55.6 NC_004687.1 + 20385 0.66 0.928368
Target:  5'- gCCAGcGGUAGGccaucGGCGCCCagaccgccggguuGCAGCu--- -3'
miRNA:   3'- -GGUC-UCAUCU-----CCGCGGG-------------CGUCGuuuc -5'
19858 3' -55.6 NC_004687.1 + 30777 0.66 0.923522
Target:  5'- gCCgAGAGgAGGGGgcaccggcuccuCGCCCuGCAGCAGcAGg -3'
miRNA:   3'- -GG-UCUCaUCUCC------------GCGGG-CGUCGUU-UC- -5'
19858 3' -55.6 NC_004687.1 + 90273 0.66 0.922972
Target:  5'- -gAGAcgGUAGAGGCGCCCucgggccGCuGGCAcGAGu -3'
miRNA:   3'- ggUCU--CAUCUCCGCGGG-------CG-UCGU-UUC- -5'
19858 3' -55.6 NC_004687.1 + 69484 0.66 0.920183
Target:  5'- cCCGGGGUGuacaccgaggcggucGGGGCGCCacaGCugGGCAu-- -3'
miRNA:   3'- -GGUCUCAU---------------CUCCGCGGg--CG--UCGUuuc -5'
19858 3' -55.6 NC_004687.1 + 93866 0.66 0.917909
Target:  5'- aCCGGGGUuguuGGCGCCC-CAGUu--- -3'
miRNA:   3'- -GGUCUCAucu-CCGCGGGcGUCGuuuc -5'
19858 3' -55.6 NC_004687.1 + 77316 0.66 0.912055
Target:  5'- gCCGGAaucgcgGUGGcuccGGGCGCCC-CGGCGGu- -3'
miRNA:   3'- -GGUCU------CAUC----UCCGCGGGcGUCGUUuc -5'
19858 3' -55.6 NC_004687.1 + 67973 0.66 0.899634
Target:  5'- aCGGGGUGaacaGGGCGCUCaGCGGCGc-- -3'
miRNA:   3'- gGUCUCAUc---UCCGCGGG-CGUCGUuuc -5'
19858 3' -55.6 NC_004687.1 + 3866 0.66 0.899634
Target:  5'- gCCGGGGUGGcuGgGCCCuuGGCGAGc -3'
miRNA:   3'- -GGUCUCAUCucCgCGGGcgUCGUUUc -5'
19858 3' -55.6 NC_004687.1 + 17472 0.66 0.899634
Target:  5'- aUCGGGGUgucGGcgucacGGGCGCCCacgucgGCAGCGGAc -3'
miRNA:   3'- -GGUCUCA---UC------UCCGCGGG------CGUCGUUUc -5'
19858 3' -55.6 NC_004687.1 + 110665 0.67 0.893072
Target:  5'- gCCGGAGUGgccGAGcUGCCCGaCGGCGc-- -3'
miRNA:   3'- -GGUCUCAU---CUCcGCGGGC-GUCGUuuc -5'
19858 3' -55.6 NC_004687.1 + 26297 0.67 0.879259
Target:  5'- uUCAGggcAGUAGAGGgacguuacuCGCCCGgGGCcGGGg -3'
miRNA:   3'- -GGUC---UCAUCUCC---------GCGGGCgUCGuUUC- -5'
19858 3' -55.6 NC_004687.1 + 95252 0.67 0.872017
Target:  5'- uCgAGGGUcGAGGUGCCCGgguuGGCGAu- -3'
miRNA:   3'- -GgUCUCAuCUCCGCGGGCg---UCGUUuc -5'
19858 3' -55.6 NC_004687.1 + 74967 0.67 0.872017
Target:  5'- cCCuGGGU-GAcGGUGCCCGCuGCGu-- -3'
miRNA:   3'- -GGuCUCAuCU-CCGCGGGCGuCGUuuc -5'
19858 3' -55.6 NC_004687.1 + 120979 0.67 0.864559
Target:  5'- gCCAacuGcGGAGGCGaCCCuuGCGGCGGAGu -3'
miRNA:   3'- -GGUcu-CaUCUCCGC-GGG--CGUCGUUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.