miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19858 5' -58.6 NC_004687.1 + 82314 0.66 0.787702
Target:  5'- gUUCCcaGCUGGCGGUcguccagggucGgGCCAaGCUGg -3'
miRNA:   3'- -AAGGaaCGACCGCCA-----------CgUGGUaCGGC- -5'
19858 5' -58.6 NC_004687.1 + 16516 0.66 0.784948
Target:  5'- -gCCUUGCUgcucacGGCGGUguugguggcguugaGCGCCgagGUGUCGg -3'
miRNA:   3'- aaGGAACGA------CCGCCA--------------CGUGG---UACGGC- -5'
19858 5' -58.6 NC_004687.1 + 3556 0.66 0.778475
Target:  5'- -gCCcUGCUGGUcuucggcgugcuGGUGCagACCAUGCaCGu -3'
miRNA:   3'- aaGGaACGACCG------------CCACG--UGGUACG-GC- -5'
19858 5' -58.6 NC_004687.1 + 57412 0.66 0.769115
Target:  5'- cUCCca--UGGUGGUG-ACCAUGCCu -3'
miRNA:   3'- aAGGaacgACCGCCACgUGGUACGGc -5'
19858 5' -58.6 NC_004687.1 + 79196 0.66 0.769115
Target:  5'- gUUCCagGCUGGaCGGUuccagaGCACCAUcuCCGg -3'
miRNA:   3'- -AAGGaaCGACC-GCCA------CGUGGUAc-GGC- -5'
19858 5' -58.6 NC_004687.1 + 15383 0.66 0.769115
Target:  5'- -cCCagGCUGGCGGUgaaguuggGCACCGcaCCGg -3'
miRNA:   3'- aaGGaaCGACCGCCA--------CGUGGUacGGC- -5'
19858 5' -58.6 NC_004687.1 + 110578 0.66 0.759634
Target:  5'- -gUgUUGCUGGCcggGGUGCcCCcgGUCGg -3'
miRNA:   3'- aaGgAACGACCG---CCACGuGGuaCGGC- -5'
19858 5' -58.6 NC_004687.1 + 120996 0.66 0.759634
Target:  5'- -cCCUUGC-GGCGGaGUGCCGccGCCa -3'
miRNA:   3'- aaGGAACGaCCGCCaCGUGGUa-CGGc -5'
19858 5' -58.6 NC_004687.1 + 51461 0.66 0.759634
Target:  5'- aUCCgaccUGCUGGUGGUcuugGCcAgCAUGUCGg -3'
miRNA:   3'- aAGGa---ACGACCGCCA----CG-UgGUACGGC- -5'
19858 5' -58.6 NC_004687.1 + 40751 0.66 0.75004
Target:  5'- aUCCUUGC-GGCuGUcgGCGCCcUGCUGu -3'
miRNA:   3'- aAGGAACGaCCGcCA--CGUGGuACGGC- -5'
19858 5' -58.6 NC_004687.1 + 77905 0.66 0.740341
Target:  5'- -aCCU--CUGGCGGUGUgggaGCCcagGCCGg -3'
miRNA:   3'- aaGGAacGACCGCCACG----UGGua-CGGC- -5'
19858 5' -58.6 NC_004687.1 + 89716 0.66 0.740341
Target:  5'- gUCC-UGCUGGaGGUGaccaACCAgGCCa -3'
miRNA:   3'- aAGGaACGACCgCCACg---UGGUaCGGc -5'
19858 5' -58.6 NC_004687.1 + 131093 0.66 0.740341
Target:  5'- gUCCUgcacgGC-GGCGGUG-ACCGccugGCCGa -3'
miRNA:   3'- aAGGAa----CGaCCGCCACgUGGUa---CGGC- -5'
19858 5' -58.6 NC_004687.1 + 44964 0.66 0.740341
Target:  5'- cUCCUUGUUGGUGG----CCAUGUCGc -3'
miRNA:   3'- aAGGAACGACCGCCacguGGUACGGC- -5'
19858 5' -58.6 NC_004687.1 + 50647 0.66 0.740341
Target:  5'- cUCCguacaccgGCgaaGCGG-GCACCGUGCCc -3'
miRNA:   3'- aAGGaa------CGac-CGCCaCGUGGUACGGc -5'
19858 5' -58.6 NC_004687.1 + 105544 0.67 0.730549
Target:  5'- -aCCacUGCgcguccGGCGGUGCGCUGUGCg- -3'
miRNA:   3'- aaGGa-ACGa-----CCGCCACGUGGUACGgc -5'
19858 5' -58.6 NC_004687.1 + 142502 0.67 0.720671
Target:  5'- cUCCaagGC-GGCGGUGgacgcCGCCgAUGCCGg -3'
miRNA:   3'- aAGGaa-CGaCCGCCAC-----GUGG-UACGGC- -5'
19858 5' -58.6 NC_004687.1 + 141012 0.67 0.710717
Target:  5'- -cCCUggaugcgGCUGGCGG-GCACgGUGUa- -3'
miRNA:   3'- aaGGAa------CGACCGCCaCGUGgUACGgc -5'
19858 5' -58.6 NC_004687.1 + 150221 0.67 0.707717
Target:  5'- cUUCCUcgaucGCgaGGUGGUGCAUCAcuucccgguggugcUGCCGa -3'
miRNA:   3'- -AAGGAa----CGa-CCGCCACGUGGU--------------ACGGC- -5'
19858 5' -58.6 NC_004687.1 + 149113 0.67 0.700696
Target:  5'- gUCC-UGCgGGCGcu-CACCGUGCCGc -3'
miRNA:   3'- aAGGaACGaCCGCcacGUGGUACGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.