miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19858 5' -58.6 NC_004687.1 + 60522 1.07 0.001786
Target:  5'- aUUCCUUGCUGGCGGUGCACCAUGCCGg -3'
miRNA:   3'- -AAGGAACGACCGCCACGUGGUACGGC- -5'
19858 5' -58.6 NC_004687.1 + 102658 0.7 0.5185
Target:  5'- cUCCUcGUUGGUGGUGC-CgGUGCgGg -3'
miRNA:   3'- aAGGAaCGACCGCCACGuGgUACGgC- -5'
19858 5' -58.6 NC_004687.1 + 93577 0.7 0.538234
Target:  5'- -cUCUUGCcGGUGGUGUGCUgcaccgguGUGCCGa -3'
miRNA:   3'- aaGGAACGaCCGCCACGUGG--------UACGGC- -5'
19858 5' -58.6 NC_004687.1 + 76973 0.69 0.558218
Target:  5'- -gCCggucUGC-GGCGcGUGCACCAcggUGCCGu -3'
miRNA:   3'- aaGGa---ACGaCCGC-CACGUGGU---ACGGC- -5'
19858 5' -58.6 NC_004687.1 + 29565 0.69 0.558218
Target:  5'- cUCCggGCUGGUGGcgccguuggaGCACCAgaGCCGg -3'
miRNA:   3'- aAGGaaCGACCGCCa---------CGUGGUa-CGGC- -5'
19858 5' -58.6 NC_004687.1 + 16207 0.69 0.578407
Target:  5'- -aCCUUGCUGGUGGcgaugucggGCACC-UGCg- -3'
miRNA:   3'- aaGGAACGACCGCCa--------CGUGGuACGgc -5'
19858 5' -58.6 NC_004687.1 + 40921 0.69 0.588562
Target:  5'- gUUgUUGCUGGUcgccgugggcaGGUcGCGCCGUGCUGc -3'
miRNA:   3'- aAGgAACGACCG-----------CCA-CGUGGUACGGC- -5'
19858 5' -58.6 NC_004687.1 + 87447 0.69 0.60896
Target:  5'- -aCCUU-CUGGCGcaGCgcgGCCAUGCCGg -3'
miRNA:   3'- aaGGAAcGACCGCcaCG---UGGUACGGC- -5'
19858 5' -58.6 NC_004687.1 + 83464 0.68 0.629428
Target:  5'- -gCCgagcUGCUGGCcguccaGGUGCgucACCGUGCCc -3'
miRNA:   3'- aaGGa---ACGACCG------CCACG---UGGUACGGc -5'
19858 5' -58.6 NC_004687.1 + 107294 0.68 0.649904
Target:  5'- -aCCUU-CUGGuCGGcGCugGCCAUGCCGc -3'
miRNA:   3'- aaGGAAcGACC-GCCaCG--UGGUACGGC- -5'
19858 5' -58.6 NC_004687.1 + 93498 0.68 0.653994
Target:  5'- -gCCgUUGgUGGCGGUgaacgaaccacgguuGCACCA-GCCGg -3'
miRNA:   3'- aaGG-AACgACCGCCA---------------CGUGGUaCGGC- -5'
19858 5' -58.6 NC_004687.1 + 127231 0.68 0.660125
Target:  5'- -aCCggaacGCUgGGCGGUGCGCgAUGCg- -3'
miRNA:   3'- aaGGaa---CGA-CCGCCACGUGgUACGgc -5'
19858 5' -58.6 NC_004687.1 + 9683 0.68 0.660125
Target:  5'- -cCCUgGCUGuaucCGGccaGCACCAUGCCGu -3'
miRNA:   3'- aaGGAaCGACc---GCCa--CGUGGUACGGC- -5'
19858 5' -58.6 NC_004687.1 + 10746 0.67 0.690617
Target:  5'- ----cUGCUGGcCGG-GCACCAacgucgUGCCGa -3'
miRNA:   3'- aaggaACGACC-GCCaCGUGGU------ACGGC- -5'
19858 5' -58.6 NC_004687.1 + 52610 0.67 0.690617
Target:  5'- gUCCUU-CUGGCGG-GCGCCGUaGUa- -3'
miRNA:   3'- aAGGAAcGACCGCCaCGUGGUA-CGgc -5'
19858 5' -58.6 NC_004687.1 + 149113 0.67 0.700696
Target:  5'- gUCC-UGCgGGCGcu-CACCGUGCCGc -3'
miRNA:   3'- aAGGaACGaCCGCcacGUGGUACGGC- -5'
19858 5' -58.6 NC_004687.1 + 71854 0.67 0.700696
Target:  5'- -aCUguaGCUGGCcuGGUGCACCAggacGUCGg -3'
miRNA:   3'- aaGGaa-CGACCG--CCACGUGGUa---CGGC- -5'
19858 5' -58.6 NC_004687.1 + 150221 0.67 0.707717
Target:  5'- cUUCCUcgaucGCgaGGUGGUGCAUCAcuucccgguggugcUGCCGa -3'
miRNA:   3'- -AAGGAa----CGa-CCGCCACGUGGU--------------ACGGC- -5'
19858 5' -58.6 NC_004687.1 + 141012 0.67 0.710717
Target:  5'- -cCCUggaugcgGCUGGCGG-GCACgGUGUa- -3'
miRNA:   3'- aaGGAa------CGACCGCCaCGUGgUACGgc -5'
19858 5' -58.6 NC_004687.1 + 142502 0.67 0.720671
Target:  5'- cUCCaagGC-GGCGGUGgacgcCGCCgAUGCCGg -3'
miRNA:   3'- aAGGaa-CGaCCGCCAC-----GUGG-UACGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.