Results 21 - 29 of 29 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 19859 | 3' | -56.1 | NC_004687.1 | + | 108882 | 0.69 | 0.766421 |
|
Target: 5'- -cCGGGACGAaugaaGCGCCCcucgUCCCGGuAGUg -3' miRNA: 3'- gaGUUUUGCU-----CGCGGG----AGGGCC-UCAg -5' |
|||||||
| 19859 | 3' | -56.1 | NC_004687.1 | + | 60481 | 0.7 | 0.737639 |
|
Target: 5'- gCUCGAccaGAUGAGCGCgCCgacggCgCCGGuGUCg -3' miRNA: 3'- -GAGUU---UUGCUCGCG-GGa----G-GGCCuCAG- -5' |
|||||||
| 19859 | 3' | -56.1 | NC_004687.1 | + | 148562 | 0.7 | 0.737639 |
|
Target: 5'- gCUCucGGCGcAGCG-CCUCCUGGAcGUCc -3' miRNA: 3'- -GAGuuUUGC-UCGCgGGAGGGCCU-CAG- -5' |
|||||||
| 19859 | 3' | -56.1 | NC_004687.1 | + | 86092 | 0.7 | 0.736664 |
|
Target: 5'- gCUCAAcgUGAGCGCCCcggUgCCGGugcgcgcGGUCg -3' miRNA: 3'- -GAGUUuuGCUCGCGGG---AgGGCC-------UCAG- -5' |
|||||||
| 19859 | 3' | -56.1 | NC_004687.1 | + | 53977 | 0.7 | 0.727849 |
|
Target: 5'- uUCAAGGgcauCGAGUGCa-UCCCGGAGUg -3' miRNA: 3'- gAGUUUU----GCUCGCGggAGGGCCUCAg -5' |
|||||||
| 19859 | 3' | -56.1 | NC_004687.1 | + | 124121 | 0.71 | 0.657528 |
|
Target: 5'- uCUCAGcAGCGGugauccguGCGCCCUCgUGGaAGUCg -3' miRNA: 3'- -GAGUU-UUGCU--------CGCGGGAGgGCC-UCAG- -5' |
|||||||
| 19859 | 3' | -56.1 | NC_004687.1 | + | 101129 | 0.72 | 0.616704 |
|
Target: 5'- uCUCGGcgcccuggauGACGAacucGCgGCCCUCCCGGAugGUCu -3' miRNA: 3'- -GAGUU----------UUGCU----CG-CGGGAGGGCCU--CAG- -5' |
|||||||
| 19859 | 3' | -56.1 | NC_004687.1 | + | 96595 | 0.77 | 0.325956 |
|
Target: 5'- gUCAu--CGAGCGCCgUCgCGGGGUCg -3' miRNA: 3'- gAGUuuuGCUCGCGGgAGgGCCUCAG- -5' |
|||||||
| 19859 | 3' | -56.1 | NC_004687.1 | + | 60104 | 1.1 | 0.002383 |
|
Target: 5'- cCUCAAAACGAGCGCCCUCCCGGAGUCg -3' miRNA: 3'- -GAGUUUUGCUCGCGGGAGGGCCUCAG- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home