miRNA display CGI


Results 1 - 20 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19859 5' -55.2 NC_004687.1 + 154955 0.66 0.917142
Target:  5'- --cGCUCGGGguccagGUAGCgaGAGCGCu- -3'
miRNA:   3'- uauUGAGCCCaa----CGUCGg-CUCGUGca -5'
19859 5' -55.2 NC_004687.1 + 102449 0.66 0.911174
Target:  5'- cUGAgUCGGGUgGCcuuGGCCGAGUgauCGUu -3'
miRNA:   3'- uAUUgAGCCCAaCG---UCGGCUCGu--GCA- -5'
19859 5' -55.2 NC_004687.1 + 7132 0.66 0.904961
Target:  5'- -cGACaUCGGGUccaugGUGGCCGuugcGGCGCGa -3'
miRNA:   3'- uaUUG-AGCCCAa----CGUCGGC----UCGUGCa -5'
19859 5' -55.2 NC_004687.1 + 124005 0.66 0.904961
Target:  5'- -----gUGGGUcaGCAGCCGAuGCAUGUg -3'
miRNA:   3'- uauugaGCCCAa-CGUCGGCU-CGUGCA- -5'
19859 5' -55.2 NC_004687.1 + 126908 0.66 0.898505
Target:  5'- --uGCUCGGcGaUGaAGUCGAGCGCGg -3'
miRNA:   3'- uauUGAGCC-CaACgUCGGCUCGUGCa -5'
19859 5' -55.2 NC_004687.1 + 106979 0.67 0.89181
Target:  5'- -cAGCgcCGGGcccGCgaGGCCGAGCGCGa -3'
miRNA:   3'- uaUUGa-GCCCaa-CG--UCGGCUCGUGCa -5'
19859 5' -55.2 NC_004687.1 + 151733 0.67 0.89181
Target:  5'- --cACUCGGaGggGCGccGCCGGGCcaACGUg -3'
miRNA:   3'- uauUGAGCC-CaaCGU--CGGCUCG--UGCA- -5'
19859 5' -55.2 NC_004687.1 + 10662 0.67 0.884878
Target:  5'- ---cUUCGGGgaucuucUGCAGCaccauGAGCGCGUg -3'
miRNA:   3'- uauuGAGCCCa------ACGUCGg----CUCGUGCA- -5'
19859 5' -55.2 NC_004687.1 + 125177 0.67 0.877715
Target:  5'- ---uCUCGGGgUGUAcGCCGAGCccaACGg -3'
miRNA:   3'- uauuGAGCCCaACGU-CGGCUCG---UGCa -5'
19859 5' -55.2 NC_004687.1 + 2861 0.67 0.870324
Target:  5'- --uGCUgCGGG-UGC-GCCGAGUGCGa -3'
miRNA:   3'- uauUGA-GCCCaACGuCGGCUCGUGCa -5'
19859 5' -55.2 NC_004687.1 + 73861 0.67 0.870324
Target:  5'- cAUGAUuccggUCGGGUUGCcGCCGGaCGCGc -3'
miRNA:   3'- -UAUUG-----AGCCCAACGuCGGCUcGUGCa -5'
19859 5' -55.2 NC_004687.1 + 138285 0.67 0.862712
Target:  5'- --cACUCaGG-UGCAGCCGGGCGa-- -3'
miRNA:   3'- uauUGAGcCCaACGUCGGCUCGUgca -5'
19859 5' -55.2 NC_004687.1 + 118667 0.67 0.861939
Target:  5'- -aAGCUCGGcGgcgGCGgcgccucGCUGAGCACGg -3'
miRNA:   3'- uaUUGAGCC-Caa-CGU-------CGGCUCGUGCa -5'
19859 5' -55.2 NC_004687.1 + 75807 0.67 0.854884
Target:  5'- uUGACUCGcacGG-UGUAGCCaGAGCGCa- -3'
miRNA:   3'- uAUUGAGC---CCaACGUCGG-CUCGUGca -5'
19859 5' -55.2 NC_004687.1 + 20413 0.68 0.846848
Target:  5'- --cGC-CGGGUUGCAGCUGA--ACGUc -3'
miRNA:   3'- uauUGaGCCCAACGUCGGCUcgUGCA- -5'
19859 5' -55.2 NC_004687.1 + 80280 0.68 0.846848
Target:  5'- -cGGCggCGGGUUGUugaccugcGCCGAGC-CGUa -3'
miRNA:   3'- uaUUGa-GCCCAACGu-------CGGCUCGuGCA- -5'
19859 5' -55.2 NC_004687.1 + 59353 0.68 0.846848
Target:  5'- ---uCUCGGG-UGUGGaCCGAGCGCu- -3'
miRNA:   3'- uauuGAGCCCaACGUC-GGCUCGUGca -5'
19859 5' -55.2 NC_004687.1 + 46093 0.68 0.838609
Target:  5'- -cAGCUCGGGUggcgGCgccAGCC-AGUACGa -3'
miRNA:   3'- uaUUGAGCCCAa---CG---UCGGcUCGUGCa -5'
19859 5' -55.2 NC_004687.1 + 130820 0.68 0.838609
Target:  5'- -cGACUCGGuGggcgccgucgUGCgccucaucgaGGCCGGGCACGg -3'
miRNA:   3'- uaUUGAGCC-Ca---------ACG----------UCGGCUCGUGCa -5'
19859 5' -55.2 NC_004687.1 + 39682 0.68 0.830176
Target:  5'- -cGGCgUCGGuGgcgUGCAGCCGGGgCAUGg -3'
miRNA:   3'- uaUUG-AGCC-Ca--ACGUCGGCUC-GUGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.