miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19860 5' -57.1 NC_004687.1 + 34567 0.66 0.89323
Target:  5'- gCGAcGGCCCgCCUGcGGGugcugccgagaaGGGCGGCGa -3'
miRNA:   3'- -GCU-CUGGGaGGACuUCC------------UCCGCUGUc -5'
19860 5' -57.1 NC_004687.1 + 124748 0.66 0.865247
Target:  5'- gGAGACCUUCUUGAGcaccuGGuaguucGGGuCGGCGGg -3'
miRNA:   3'- gCUCUGGGAGGACUU-----CC------UCC-GCUGUC- -5'
19860 5' -57.1 NC_004687.1 + 84399 0.66 0.865247
Target:  5'- gGAGGCUgugaUCCUGAGGaAGGCGAacCGGu -3'
miRNA:   3'- gCUCUGGg---AGGACUUCcUCCGCU--GUC- -5'
19860 5' -57.1 NC_004687.1 + 34661 0.66 0.865247
Target:  5'- uGAGGCCC-CCgaaGAGGAuGGCGAgGa -3'
miRNA:   3'- gCUCUGGGaGGac-UUCCU-CCGCUgUc -5'
19860 5' -57.1 NC_004687.1 + 130916 0.67 0.817274
Target:  5'- gGAGGCCCUgCUuucucAGGGGGUGccGCAGa -3'
miRNA:   3'- gCUCUGGGAgGAcu---UCCUCCGC--UGUC- -5'
19860 5' -57.1 NC_004687.1 + 66680 0.68 0.772737
Target:  5'- cCGGGGCUCgaUCCUGGucGGcGGCGGCAu -3'
miRNA:   3'- -GCUCUGGG--AGGACUu-CCuCCGCUGUc -5'
19860 5' -57.1 NC_004687.1 + 111782 0.69 0.744478
Target:  5'- cCGAGAUCCgggUCCUGGAGGAauacaccgaGGCGcCGu -3'
miRNA:   3'- -GCUCUGGG---AGGACUUCCU---------CCGCuGUc -5'
19860 5' -57.1 NC_004687.1 + 88053 0.69 0.734855
Target:  5'- cCGAGgugGCCCgUCUGGAGGAGGCcacCAGc -3'
miRNA:   3'- -GCUC---UGGGaGGACUUCCUCCGcu-GUC- -5'
19860 5' -57.1 NC_004687.1 + 17345 0.69 0.725145
Target:  5'- -cGGACCCuUCUUGAcguAGGAGGCGuCGc -3'
miRNA:   3'- gcUCUGGG-AGGACU---UCCUCCGCuGUc -5'
19860 5' -57.1 NC_004687.1 + 21173 0.69 0.715357
Target:  5'- uGGGACCC------AGGAGGCGACGGu -3'
miRNA:   3'- gCUCUGGGaggacuUCCUCCGCUGUC- -5'
19860 5' -57.1 NC_004687.1 + 78434 0.7 0.699556
Target:  5'- --cGGCCUUCCcGGgccgcuacgccgcacAGGAGGCGGCGGc -3'
miRNA:   3'- gcuCUGGGAGGaCU---------------UCCUCCGCUGUC- -5'
19860 5' -57.1 NC_004687.1 + 75178 0.7 0.695582
Target:  5'- cCGAGGCCCUCUacgaGAAGGucaccGGCGAgGa -3'
miRNA:   3'- -GCUCUGGGAGGa---CUUCCu----CCGCUgUc -5'
19860 5' -57.1 NC_004687.1 + 24121 0.7 0.685612
Target:  5'- aGAGACcggagCCUCC-GAGGGAGGUGcUAGg -3'
miRNA:   3'- gCUCUG-----GGAGGaCUUCCUCCGCuGUC- -5'
19860 5' -57.1 NC_004687.1 + 74570 0.7 0.665552
Target:  5'- aGAuGGCCCUgUCUGAAGGcuuccgGGGCGGCGa -3'
miRNA:   3'- gCU-CUGGGA-GGACUUCC------UCCGCUGUc -5'
19860 5' -57.1 NC_004687.1 + 42449 0.7 0.655479
Target:  5'- aGAGAagcCCCUUCgaGGAGGAacaauGGCGACGGu -3'
miRNA:   3'- gCUCU---GGGAGGa-CUUCCU-----CCGCUGUC- -5'
19860 5' -57.1 NC_004687.1 + 120540 0.71 0.584887
Target:  5'- uCGAGGCCUUCCggacgcUGGAGGAGcacgaGCGAgAGg -3'
miRNA:   3'- -GCUCUGGGAGG------ACUUCCUC-----CGCUgUC- -5'
19860 5' -57.1 NC_004687.1 + 97776 0.71 0.584887
Target:  5'- aGAGACCCgaaCCUGAAGaGGGGCa---- -3'
miRNA:   3'- gCUCUGGGa--GGACUUC-CUCCGcuguc -5'
19860 5' -57.1 NC_004687.1 + 39084 0.72 0.55499
Target:  5'- uCGGGcaguuccauGCCCUCUUcGAAGGGGGCGAUc- -3'
miRNA:   3'- -GCUC---------UGGGAGGA-CUUCCUCCGCUGuc -5'
19860 5' -57.1 NC_004687.1 + 105365 0.74 0.459463
Target:  5'- gGAGACCUaCCUGAgcaAGGuGGGCGGCGa -3'
miRNA:   3'- gCUCUGGGaGGACU---UCC-UCCGCUGUc -5'
19860 5' -57.1 NC_004687.1 + 58179 1.09 0.002392
Target:  5'- uCGAGACCCUCCUGAAGGAGGCGACAGg -3'
miRNA:   3'- -GCUCUGGGAGGACUUCCUCCGCUGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.