miRNA display CGI


Results 1 - 20 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19861 3' -54.5 NC_004687.1 + 136376 0.66 0.943423
Target:  5'- -cGGCaGCGGccacAAGGACCuugGCCGUCuCCa -3'
miRNA:   3'- uaUCGaCGUC----UUCCUGG---UGGUAGcGG- -5'
19861 3' -54.5 NC_004687.1 + 6760 0.66 0.943423
Target:  5'- --cGCUGCGGAA-GACCgcGCCGuucagugcguUCGCUg -3'
miRNA:   3'- uauCGACGUCUUcCUGG--UGGU----------AGCGG- -5'
19861 3' -54.5 NC_004687.1 + 57015 0.66 0.943423
Target:  5'- --uGCUGCcGcAGcGcACCGCCAacUCGCCg -3'
miRNA:   3'- uauCGACGuCuUC-C-UGGUGGU--AGCGG- -5'
19861 3' -54.5 NC_004687.1 + 112136 0.66 0.943423
Target:  5'- -gAGCccgGCaaGGAGGGcACCACCGagaUCGUCc -3'
miRNA:   3'- uaUCGa--CG--UCUUCC-UGGUGGU---AGCGG- -5'
19861 3' -54.5 NC_004687.1 + 113261 0.66 0.943423
Target:  5'- --cGCUGguGca-GACCGCCGUCaCCa -3'
miRNA:   3'- uauCGACguCuucCUGGUGGUAGcGG- -5'
19861 3' -54.5 NC_004687.1 + 142492 0.66 0.943423
Target:  5'- --cGCUGCGGGccuccaAGGcggcgguggacGCCGCCGaUGCCg -3'
miRNA:   3'- uauCGACGUCU------UCC-----------UGGUGGUaGCGG- -5'
19861 3' -54.5 NC_004687.1 + 129551 0.66 0.943423
Target:  5'- --cGcCUGCGcGAGGACC-CCAaUGCCg -3'
miRNA:   3'- uauC-GACGUcUUCCUGGuGGUaGCGG- -5'
19861 3' -54.5 NC_004687.1 + 116734 0.66 0.938677
Target:  5'- -cGGCcccgGCAGAugcuccAGGACCucuGCCGUC-CCa -3'
miRNA:   3'- uaUCGa---CGUCU------UCCUGG---UGGUAGcGG- -5'
19861 3' -54.5 NC_004687.1 + 116245 0.66 0.938677
Target:  5'- -cGGCUGCAc----GCCACCGaCGCCg -3'
miRNA:   3'- uaUCGACGUcuuccUGGUGGUaGCGG- -5'
19861 3' -54.5 NC_004687.1 + 80048 0.66 0.933683
Target:  5'- -----aGCAGcuGGACCACCcgacCGCCg -3'
miRNA:   3'- uaucgaCGUCuuCCUGGUGGua--GCGG- -5'
19861 3' -54.5 NC_004687.1 + 91766 0.66 0.933683
Target:  5'- --cGCcG-AGGAGGACCGCUGggagCGCCu -3'
miRNA:   3'- uauCGaCgUCUUCCUGGUGGUa---GCGG- -5'
19861 3' -54.5 NC_004687.1 + 2376 0.66 0.933683
Target:  5'- cAUGG-UGUGGcAGGACUACUAcUCGCCc -3'
miRNA:   3'- -UAUCgACGUCuUCCUGGUGGU-AGCGG- -5'
19861 3' -54.5 NC_004687.1 + 120569 0.66 0.933683
Target:  5'- --uGCUGCAGGcuguuGGcGCCACCAggggcugcUGCCg -3'
miRNA:   3'- uauCGACGUCUu----CC-UGGUGGUa-------GCGG- -5'
19861 3' -54.5 NC_004687.1 + 55074 0.66 0.933683
Target:  5'- --uGCUGgAGAAGG-CCACgGUgcccaaguaCGCCa -3'
miRNA:   3'- uauCGACgUCUUCCuGGUGgUA---------GCGG- -5'
19861 3' -54.5 NC_004687.1 + 120977 0.66 0.93317
Target:  5'- -gGGCcaacUGCGGAGGcGACCcuugcggcggaguGCCGcCGCCa -3'
miRNA:   3'- uaUCG----ACGUCUUC-CUGG-------------UGGUaGCGG- -5'
19861 3' -54.5 NC_004687.1 + 109877 0.66 0.92844
Target:  5'- --cGCUGCgcuGGAAGG-CCGCgacgaUGUCGCCc -3'
miRNA:   3'- uauCGACG---UCUUCCuGGUG-----GUAGCGG- -5'
19861 3' -54.5 NC_004687.1 + 120887 0.66 0.92844
Target:  5'- -cGGCUGCc--GGGGCUGCUGcCGCCg -3'
miRNA:   3'- uaUCGACGucuUCCUGGUGGUaGCGG- -5'
19861 3' -54.5 NC_004687.1 + 47809 0.66 0.92844
Target:  5'- gGUGGC-GCAGGcgagcGGGGCUccgGCCAUCGguCCg -3'
miRNA:   3'- -UAUCGaCGUCU-----UCCUGG---UGGUAGC--GG- -5'
19861 3' -54.5 NC_004687.1 + 102637 0.66 0.92844
Target:  5'- cGUAGUcGCGGGAGG-CCugCGggaCGUCg -3'
miRNA:   3'- -UAUCGaCGUCUUCCuGGugGUa--GCGG- -5'
19861 3' -54.5 NC_004687.1 + 6385 0.66 0.927902
Target:  5'- -gAGCUGCGGugagcccGAGGugCA---UCGCCa -3'
miRNA:   3'- uaUCGACGUC-------UUCCugGUgguAGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.