miRNA display CGI


Results 1 - 20 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19861 3' -54.5 NC_004687.1 + 53393 0.69 0.794116
Target:  5'- -aGGCccaGCAGGAGcuGGCCaucgcgGCCAUCGCCc -3'
miRNA:   3'- uaUCGa--CGUCUUC--CUGG------UGGUAGCGG- -5'
19861 3' -54.5 NC_004687.1 + 16911 0.71 0.736175
Target:  5'- -cAGCgcaaGgAGAAGGACUACU-UCGCCg -3'
miRNA:   3'- uaUCGa---CgUCUUCCUGGUGGuAGCGG- -5'
19861 3' -54.5 NC_004687.1 + 34983 0.7 0.746126
Target:  5'- -aGGCgGCAG-AGGACCccACCGggGCCg -3'
miRNA:   3'- uaUCGaCGUCuUCCUGG--UGGUagCGG- -5'
19861 3' -54.5 NC_004687.1 + 140389 0.7 0.759879
Target:  5'- cAUGGCaGCGGGcagcuacuuccucaaGGGcACCGCCGUCGUg -3'
miRNA:   3'- -UAUCGaCGUCU---------------UCC-UGGUGGUAGCGg -5'
19861 3' -54.5 NC_004687.1 + 110420 0.7 0.765704
Target:  5'- -gAGCUGCAcGAGGGCUacggcgggGCCAUCcucaGCCu -3'
miRNA:   3'- uaUCGACGUcUUCCUGG--------UGGUAG----CGG- -5'
19861 3' -54.5 NC_004687.1 + 118203 0.7 0.765704
Target:  5'- --uGCUGgAGAAGGuuuaccgaCACCGUCGCg -3'
miRNA:   3'- uauCGACgUCUUCCug------GUGGUAGCGg -5'
19861 3' -54.5 NC_004687.1 + 27280 0.7 0.765704
Target:  5'- --cGCUGCAcucgccGAGGACaagCACUAUCGCCc -3'
miRNA:   3'- uauCGACGUc-----UUCCUG---GUGGUAGCGG- -5'
19861 3' -54.5 NC_004687.1 + 19748 0.7 0.775312
Target:  5'- -aAGgaGCcccGAAauGACCGCCAUCGCCa -3'
miRNA:   3'- uaUCgaCGu--CUUc-CUGGUGGUAGCGG- -5'
19861 3' -54.5 NC_004687.1 + 23541 0.7 0.775312
Target:  5'- cGUGGUc-CAGcc-GACCACCAUCGCCg -3'
miRNA:   3'- -UAUCGacGUCuucCUGGUGGUAGCGG- -5'
19861 3' -54.5 NC_004687.1 + 87234 0.71 0.736175
Target:  5'- -aAGCUGCAGAuccGGcUCACCcgCGCg -3'
miRNA:   3'- uaUCGACGUCUu--CCuGGUGGuaGCGg -5'
19861 3' -54.5 NC_004687.1 + 48785 0.71 0.736175
Target:  5'- -gAGCUGCAGAccccGGAUCuguCCGagGCCg -3'
miRNA:   3'- uaUCGACGUCUu---CCUGGu--GGUagCGG- -5'
19861 3' -54.5 NC_004687.1 + 285 0.71 0.736175
Target:  5'- -----aGCAGAGGGuccagACCGCCuUCGCCa -3'
miRNA:   3'- uaucgaCGUCUUCC-----UGGUGGuAGCGG- -5'
19861 3' -54.5 NC_004687.1 + 10576 0.76 0.451645
Target:  5'- -gAGCUcaaccaGCAGAAGGccgcgACCGCCGUgGCCa -3'
miRNA:   3'- uaUCGA------CGUCUUCC-----UGGUGGUAgCGG- -5'
19861 3' -54.5 NC_004687.1 + 68978 0.75 0.470597
Target:  5'- -gAGCUGCAGuucGAGGGCCgggugagccugACCAUCGUg -3'
miRNA:   3'- uaUCGACGUC---UUCCUGG-----------UGGUAGCGg -5'
19861 3' -54.5 NC_004687.1 + 99203 0.75 0.499758
Target:  5'- --cGCaaUGCAGAAGGAUCGCCGUCuuCCa -3'
miRNA:   3'- uauCG--ACGUCUUCCUGGUGGUAGc-GG- -5'
19861 3' -54.5 NC_004687.1 + 91671 0.74 0.519636
Target:  5'- -gAGgaGCAGGccgaggaagAGGACUuCCAUCGCCa -3'
miRNA:   3'- uaUCgaCGUCU---------UCCUGGuGGUAGCGG- -5'
19861 3' -54.5 NC_004687.1 + 17281 0.73 0.60171
Target:  5'- -cAGCUGCgugcggccuGGAAccGGGCCGCUGUCGCUc -3'
miRNA:   3'- uaUCGACG---------UCUU--CCUGGUGGUAGCGG- -5'
19861 3' -54.5 NC_004687.1 + 18769 0.73 0.622606
Target:  5'- -gGGCUGCccuGGGAGGACgACgagGUCGCCc -3'
miRNA:   3'- uaUCGACG---UCUUCCUGgUGg--UAGCGG- -5'
19861 3' -54.5 NC_004687.1 + 38272 0.72 0.633069
Target:  5'- -gAGCaGCGGAugcgcgaguuccAGGACCugCAgCGCCg -3'
miRNA:   3'- uaUCGaCGUCU------------UCCUGGugGUaGCGG- -5'
19861 3' -54.5 NC_004687.1 + 17042 0.71 0.714982
Target:  5'- -cGGCUGCugacugaGGAGGGAUCuuCC-UCGCCg -3'
miRNA:   3'- uaUCGACG-------UCUUCCUGGu-GGuAGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.